MmuINT0104198 @ mm9
Intron Retention
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80484351-80488230:-
Coord C1 exon
chr11:80488116-80488230
Coord A exon
chr11:80484522-80488115
Coord C2 exon
chr11:80484351-80484521
Length
3594 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CTTTCCTGCTTGTCCTGCAGATT
3' ss Score
12.49
Exon sequences
Seq C1 exon
CTTTGAGCAGTTCTGCATTAACTACTGCAACGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGGGAGGGCATCCCTTGGAAACAC
Seq A exon
GTGAGTGCCGTCCTGGGGAGCAACTCCCTGTGCTGCCCACCTTAGCAGACCTTCTGACCTCTGCGGCTTCCTCATTGATGTTTATCTATCAGAGGGTAGCATCGCTCAAAGTTCACTCTCTTGGCTTCAGTTAGATGAACTTATTTCCCGACTCAGTTGTTCCTGTTCCTCCTCTGGAGAGGAGTCATTCCCTCCTCTCCTCTGGGATCTAAGTGGTGGTGAACCGCCCTCGGCTGCTGCTGCTCCCATTCTCTGAAGCCTGTGGTTGGGGCGCTGGGACATTGTATTCCTGTTCAGTTCCACATTCTCCCTTTTGCTGTCACCTCTCTCCTCATGGCTCTTTGTGGATGTTTGTAACTGTCAGAGGCAAACTCTGCCAATGAGATGGAGACAGGAAGTGATACTGGTCGGAGGTTCACAGCTGAGAGACTGGCTCTCCAGGCTTCCTTGTTCTCTCCTGCTCCTAACAGGAGTGAGCCCTGTGTGCGTGTCACTATTCTCACTCCTTTATATTTTAAAACAGTTTTGGCAGTAGACTTTTTAAAACCCTCTGACTTTTGCTTATAGTTATTTGTTTCTGTTTTGTGAAATTTTGTCAGGCTCCTTTGTTTCTTAGGGGACAGTCTGATGTTTTCCCAGAACCCTTGAATCCTACTATGAAGCCAAGGATGGCCTGCGCTCCTCACTCAAGCTGCACCTCCCAAGTGCTGGGGTTATAGGCTCTTGCTGCCATGCCTGGTTGCTGAGTTTATAAAACTCCACTCTCACCACACAATAAAAATCAAGCCAGTATTTTTTCTCTGATAGCCAATATAGTATTGACATTTCAATTCAAAAGCTATTTGAAGTGTCATATTTAAATTATTTTTATATTCATACCTTCCCATTTTCTATTCTACTTATTTATTTTAAAAAGAGAGTGGTATAATAAATAGCACTTCTGCCTCAAATTGCATTTTTGCCTTCCATCATGTGTTAAATATTAGAATGCCAAAAACGTCATTGAAGTATATGAACATAAAATAAACCTGAGTTGTCAATTTTATTATAAAAGAACTGCCTATTGTTTGACTTAAACAGTGATCTCTCATAGCTATTTAAAATACAATTCAATTAAGTTTATAGGAGGTTTCCTAAGAATAAATCTTTTCTTTAATATACAATATAACTGAAGTTGAGGCTTTTTTTAAAGCATGAATCTTATAAAACCTGTTATCCAGGTGTGATTTGGAGGTAACTAATCCAAAATATCCTTTGAAGCTCGTTGTGGTGGCACATACATGTAATCTCAGCACTCCAGAGGCTGAGGCAAGAGAATCACAAGTTTGAGGCCAACCAAGGCTATACAATAAAACCCTACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAACTCCTCCAACAATCAGAATATCAAGTCCGTGGGCTTCGTTCCCAGCAGGAGGCCTAACAGCGGCAGTAGCGGCATCCAGACACCTCAGACAAGCTCGGCAACCCTGAAACAGACCACTAAGGCAGCAGAGCCCAACTCCCAGGCGACAGAAACAGCATGGTGTGTGCCAGCATCATAGCCTCTGTTTGCCTTAGAGCCCCAAACTTCTAAGCACTGTGCTTTCTCTCACCATTATAGAACATTCAAGCGTTCTCTGGAGTAAGAAGGAAACATGAACTCTGCACCATCCACCTCCTCATGCCACGGAGCCTTCCTCACACGTCCAGACTACCTGGATTACTCAGCCATGACAGTCCTTCACCTGTCATTTTCCACATCCCTCTGAGACAAATCATCACAGAAACTGTAACCACAGCTCTGTGACCCCATCCCAAAAATGAATAGCAGTTCCTTTAGTTTCATTTCCTACTTCTTACGTTGCTGTGTTGCTGTTGATGGTGACAGTTTGCTTGATTAGATCCTTATGAGTAGAGTGATTGATTAATTGATTGATTGACTGACTGATTGATGATTGATTGATCGATTGAAAGGTTTCTCACATAGGTCTGCCTCCTGTGCTCCCTCCCTTCTTCCCTCACTCCTTCTCTTCCCATCCCTTTCTTTTTTCCCTTGTAATCTTTTGTTGAAAAGAGTGAGCACTTTTTCTGTAATGAGCATTTTTGTCTGTAAGGTTTCCCAGCCCAGATTTTGCTAATCCAATTCCTGAAGTGTCATTAACACACTTTTGTGTACCTGTGTGTTGTGTGTATTCGTGATGAGATCTAGTGTCTTGACCGGTTTCAGAATTAGATTTTCTTCAGAGCCTATTTTATGGCCTGTACGTGGATGCCTACCAGGAGTTCATAAAAATCTGATTATCCCTCTGATTCATTTGCGTCTAAAAGCAAATAATGCTTTTGGTTTTTAAATTTCTATTTTTCCTTCTGTGTGCATGCATGCCTGTCTGTATGTGCACAGCATGCTTACGGGTTCTATGGAGGCCAGAAGAGGGCACTGGAAACCTTGGAGCTGTAGTTACAGGGATTGTGAGCCACCTGATATGTGTGCTAAGAACTGAATCAGGTATCTCTCTCCACAAGAGCAGTAAGAGCTCTTAAGCACTGCACCATCTCTGGAGCCCCTACAAATCATTTTAACTATTGAGAACTTCATACTCTAGTGAACTCCCATAAAGTTAAAATTCAATTTTCAATTACATTGTTTGCCTGAAGCTTTCTAAGAATATATTGTATACATTGTATGTTTTATATAGACATAGCTGGATTTTAGATTTTAGTTATAAAGCTTGTTATTCAGATTCCATAGTCGTAGGAAGAAAGTTGCTGTTAAAAGTGTTTGCATTTGGAGTGAGGGTATGACACGGGACCTCTGTATCCATAAGTCACCTTGCACATCTCTCCCAGCTCATGGGCATTCAGGTCATCAGAAGCGCCTGACTTTTAAAAGCATCTTTAAGCAGTGCTTAAAGCACCATTAAACTTAAAAACAAGAGTCGTTAGAATCTTCAGCCAACATCAGTGGCTTCTAGGAATACAGTTGAAATTTTAAGGTAATTCTTATACCCGGGACAGAAGACTTTACTTTCATAGTCCTAATATTTGAAATGTTTGCCAGTAACAGATTTCCTTCCTTTTTTTGTATTTTAGGACATTTTTCTAAAGGTGTAAATAACTTTATTCATAACTGAAAATATAGTACTGAACATATAAACATGAAAACACGGGTAATTCTTGCAGTGGGGCTGTCCTGCATTGAACGGTTTAACAGCATCCTGACCTTCACCCACTCAGAACCTGTAACATTCCTCTTACCATGAGAATCAAAACTGTCTGCTTACATTTTATTACATGTCCCCAAAGCAAAGTTAATCTCAATTGAAAGAGTGGGATTGGATGTAGGATGGGGAGGCAGGAAGGACAAAGACAAGAATTAATCACTCTTGCCTTAGTCCAGTCATCACTGATGTTCCCTTCATAGCACAAGAGTGAAGGCATTAGGTCGGAGACCTCCGTTAACATGTGTGCTTGACTGTCTGCCCAGTTGACACTGAGGTGAAGGAAGGGGACACCTATGTGCTTGCTTGTTGAGGTTCCTGTTCTCCTGGGCATTGCTTTCCTGCTTGTCCTGCAG
Seq C2 exon
ATTGATTACTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGACGGAATGTTCCTTGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-Myo1d:NM_177390:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: