DreINT0014941 @ danRer10
Intron Retention
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28381129-28381559:-
Coord C1 exon
chr12:28381445-28381559
Coord A exon
chr12:28381300-28381444
Coord C2 exon
chr12:28381129-28381299
Length
145 bp
Sequences
Splice sites
5' ss Seq
CATGTGGGT
5' ss Score
2.93
3' ss Seq
TTGTGTGTTCATGGAAACAGATT
3' ss Score
5.09
Exon sequences
Seq C1 exon
CTTTGAGCAGTTCTGTATAAATTACTGTAATGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTAAAACAAGAGCAGGAAGAATACCAGCGAGAAGGCATCCCTTGGAAACAT
Seq A exon
GTGGGTTTTATTCAACTGTTTCTCTAGAAGCTTTTTACGTCTTTATTATTTTATATTATACTTCAAAAAACTTGTTTTACATGGGTCTGCCTGGCTTTATTGCAGTTTGCAAATGAGCTTTGTGTTTGTGTGTTCATGGAAACAG
Seq C2 exon
ATTGACTACTTCAACAATCAGATCATCGTAGATCTCGTGGAACAGCAGCATAAGGGCATTTTTGCAGTGCTGGATGAAGCATGCATGAATGTGGGGAAGGTGACGGATGAGATGTTCCTACAGGCCCTCAATGGGAAACTGGCCAAACATGCCCACTACACTAGCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863:ENSDART00000067762:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGCTCTTCATTCAGC
R:
GGCTAGTGTAGTGGGCATGTT
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]