GgaINT1018691 @ galGal4
Intron Retention
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17773386-17773913:-
Coord C1 exon
chr7:17773807-17773913
Coord A exon
chr7:17773433-17773806
Coord C2 exon
chr7:17773386-17773432
Length
374 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTTCTTGGCCCTCTCCACAGGGA
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTTCAGAAAACTGTCTTGAACAGAAGCTGAGAACACCTCGTCGACGATGTCAGCAGCCCAAAATGCTGAATAGCCCTGAGGACAACATGTACTATAACCAGTTAAAT
Seq A exon
GTGAGTTCAAAGTGGCAATAAAGCTGTTTTACTGGCTTTGTTTCCAGTTAATAATTCTGTTATTAATACCTGTTTCAGCCCCTCCAGCCCCACCCCCACGTTCTTCTGCTCTCGTCTCGAACATGTGCTTATGCTCTTTATCTGTTGCTTTCATGTCAGGATGTCTGCCTTCACGGTGAATAATTGATGTGGTTTATCAAAGACGAGCAAGATGCATGCTTCATCAGGCTCACTTGAGCCCTTTGATCAAAAAAATTATGCTGTGACTTCTGATATTATCAGCATCTGCTTGCATTCAACACAAAATCACTTTGAATTAAAAATTAACGACTTGCTGCTTTGCTTTGACTGTGTGTTCTTGGCCCTCTCCACAG
Seq C2 exon
GGAACTCTAGAATATCAAGGGAGCAAGAGGAAGCCAAGAAAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602:ENSGALT00000015648:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]