MmuINT0104382 @ mm9
Intron Retention
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70263630-70264157:+
Coord C1 exon
chr2:70263630-70263736
Coord A exon
chr2:70263737-70264110
Coord C2 exon
chr2:70264111-70264157
Length
374 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTTCTTGGCCCTATCCACAGGGA
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTTCCGAAGAAGGTCTCTCCCAGAAGCAGCGAGCACCTCGCAGACGGTGTCAGCAGCCCAAAATGTTGAGTAGCCCCGAGGACACCATGTACTATAACCAGTTAAAT
Seq A exon
GTGAGTTCAAAGTGGCCGTAAAGCCGTTTTACCGGCTTTGTTTCCAGTTAATAATTCTGTTATTAATACCTGTTCCAGCCCCTCCAGCCCCACCCCCACTCTCTTCTGCGCTCCTCGTGAACATGTGCTTAGGCTCTTTATCTGTTGCTTTCATGTCAGGATGTCTGCCTTCACGGTGAATAATTGATGTGGTTTATCAAAGACGAGCAAGATGCATGCTTCATCAGGCTCACTTGAGCCCTTTGATCAAAAAAATTATGCTGTGACTTCTGATATTATCAGCATCTGCTTGCATTCAACACAAAATCACTTTGAATTAAAAATTAACGACTTGGTGCTTTTCTTTGACTGTGTGTTCTTGGCCCTATCCACAG
Seq C2 exon
GGAACTCTAGAATATCAAGGGAGCCAGAGGAAGCCAAGAAAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-Myo3b:NM_177376:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: