GgaINT1018716 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8316753-8319500:+
Coord C1 exon
chr10:8316753-8316853
Coord A exon
chr10:8316854-8319301
Coord C2 exon
chr10:8319302-8319500
Length
2448 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TTGCTGCTCAACCTCTTCAGGCT
3' ss Score
6.8
Exon sequences
Seq C1 exon
AACACCATGACAGATTCTACAATCCTCTTGGAGGATGTGCAGAAGATGAAAGACAAAGGGGAAATAGCACAGGCATATATTGGACTGAAGGAAACCAACAG
Seq A exon
GTACACGTTCTCTACATTTCATTTACAGTCATTTGCAGTGTGCCCTGACATCCTGAGTATATCATGTTCAATAGGTTGTATCCACCTAAGTGTAAATGCATGGGGAACACTTGTAGTTGGGGTTATAATTTGATTTGATTAGTAAAACTGCTGTGTACAGTATTTGAAAGGATTCTTAATGGTGACATGTCAAATCACAGTTCTTGGACTTGCACCTTCTTAGCCTTTAATTGACTACATTGCTCAAACTGGGTTCTGTTCCACATGCTGTTTTTAAACTTTTGTCCAGTAGTAGTCATGGTAGTCTGTCATAATATGTATATTGTAACAGCATGAAATGCTGTAACCACTTGGGCTAATACCACAAGCTAAATTTCATCACTGGGAAGAAATACATATAAACAGGAGAGGTATTGTTGTCTCCAAGTTGTTTTAGAGAATTGTTTCTTTCTCTTTTATTGTAACTATAATTTAGTATGTAATGTCCTTAACATGTCATCTCATCACCATCATGTATCTCTCTTGTATTTTTTTAAACACTTTTCTTGGAAGGCAATCTCCCCAGGACTATCATATGCTGAATGAGGACGGAGAACTTTGGCTGGTTTATGAAGGGTTAAAACAAGCCAACAGGTTACCAGACTTCTCAGAATGGTTTTTTCTTTATTTGCATCTTCTCTTCTAGCTAACTGTGTCCCTTGCTTTGGCTACAGTATTCCTTTTTGCTTAGAAAAAAATCTTTGTTGGATTTTCCTCTAAGTTAGTTGCCAAAGTTTTCCAATGTTATTTGAGAAGCTAAGATGGTGGCAACAAAGAATAGGTAATTCTCAAGAATACTTGCACAAAAGTAGACTGTAAAATGCCAGAAGATCTGCAAGGGGAGGAATTTTTTAACTGTGTATTATTTATCTGCCTTTATGTTGGATATCAAAATTAATGTACTGTTGGAATAATTTCAGCATACTCTTAACTTCTGAATAGTTACGTCTTGCTCTCTTTACTCTGACTTGGGTTCAGTAAATGTAACATTATTCTCCCACACCTCTCTATGCAAGATTCAGAGTGTAACAGACAAGAAGGAGCCCACAAGCAGAGAAGCAGTCTTCAGCTCATCGTGGCGCTGGCCAGACCTCATACAGTCACTGTGGCTGCTGCAAAGCTGCATGCTGGTCAGGTCGTTGGGCAGCTCACCTGGTTAGGAAATACAGTTCAGGTCTGCGTGTGTGACTGGGCCTCTGTAACATATCCTAGACTTCCAAAACGATCATTAGTCATGTCCTGGCACAACAGATTTTCTTAAATATGCACATTTGGTGGCAGTAACTACAGAAGGAGCTATTTTGCAGCAAGCACTACTAACTGAAGTCTTTCCTTTCCTTGTGCTTACAAATTCTAAACCTAACACAGTCTATGAAGGTGTAACTTAGAACAAGTGTTCTGCAGAGCAGAACGATCGTGTGAGAGACAGCGCTCTGCACCTCTTCCTTTTTGTCCTAGCACTGTAGAGACAACAAGCTTTGTATTAATGGCAGAGCAATGCAGGTAAACGACTATTTGCCCTCGCGTGCTTGATCTGTCTGGTTACTAATAAATGTGGCTGCCTAATGCATATTTAAACCCTGAAAGATTGTCTAATTGAGCACTAGTAGTCTCCAGTGGTGTCACTTCCTGTGTGTGTATATTTATGAAATAATGAGTCAGAGCTCTTGGACAGTGCCTTGCAAACATGAATTAATCCACACAGCAGTGCTTTGAAGGAGGCTCTTGCGTCTTATCCCCATTTCACATAAGAAGAATTTGAGACGTGATTTGCCCAAGGGAAAAGAGCGAGTCAGTGGCAAGGGTGAAACAGAGCTCCTGGATACCAGTCCTGGGTTTGGTTCTTTAGTTAACCATTCCTGCACAAATGGCAAGCCCTACGATTCTGTGACAGGCCTCTTCAAAATGTTTACTGTAGTGCAAGAATATAAAGATTATTTGTTATTAATTGCAGTTGAATGGTTTCTGACTGAACAGAGTTAACTTTAAAAAGATTTTCCTTTGTTAATATTGCAGGAAGCTAGCTTAAGTGTTTAGACTGTCTTCATTTTACACAGTTGATATGATTTGGGTAGAGGTAAAACCTCTCTTGCTCCTTTACAAACAGGAGCAGTCTGTGAAGGCGTAGCAATACATTCCTTGCCACGTTCTCAGCAGTACCATGCACAGTATGTGCTCCATCACAAAGGAAATGCAAAGCATTGTCACAATTAGTTTCCCTCCACTTTTTGATCACACAAACTTAATTTAATTAGAAGGCATACTGAAGGGTTTAAAGAGTACTCTGCCTTTTTCATTTTCCTTTGCAAGCCATGGCTAATTGTTCCTGAGCAGCAGCTAAACTCCCTCTGAGAATCTGGGATGTGTCTTACTAAGTGTGATCTTACAATTGCTGCTCAACCTCTTCAG
Seq C2 exon
GCTGCTGGAGTCTCAGCTGCAGTCGCAGAAGAAGAGCCACGAGAATGAGCTGGAGTCACTGCGAGGTGAGATCCAAAGTCTGAAGGAAGAAAACAATCGCCAGCAGCAGCTCTTGGCACAGAATCTGCAGCTGCCCCCAGAGGCCCGCATTGAAGCCAGTCTGCAGCATGAGATCACCCGGCTGACAAACGAGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]