GgaINT1018773 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8344980-8345551:+
Coord C1 exon
chr10:8344980-8345114
Coord A exon
chr10:8345115-8345453
Coord C2 exon
chr10:8345454-8345551
Length
339 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TGTTGTCTGGTATTTTTTAGTTC
3' ss Score
8.71
Exon sequences
Seq C1 exon
TTTCGTCTGTGTGCAAACTTCTTTCAAGACAATCCAGTGTCCGTTTCGCCTTTCAGTTCAACTATAAGCATCAAATCTGCAAGACCTGTCCTCAAGTCACCTAACAAGCAGCTCCGGATGACAGTTGGCAGTAAG
Seq A exon
GTACTGTGAGCACGTGCTGCTCTGTGATGCTCCTACTTTCAGGGTAGCCTGAGACTATGGTACTGTATTCTGCTCTTCATTGGGAAGCATCTGATTTTCAGTACAAAAGTCAGAGACAGTGCAGTGGTCCTCTGAGTATAAGTTTAATTTCAAAGTAGGAGACAGTTGGGTGCAATAGGACATAAAGTTTCTTGTGTTTGAGATTAAAACCCTAAGAAAATTTCTCAGTGCCCATCCAAAAGAAACCTAACAAAGAATTAAGGAATTAAGAATTAAGATTAGACTCCTTACTTAGCTGTAAACATCTCGGTAGCAAAACTGTTGTCTGGTATTTTTTAG
Seq C2 exon
TTCCGGAGTTCTCTGTCTCTACTGATGGAGACACTCAACGCAACCACCCCTCACTACGTGCGATGCATAAAGCCTAATGATGAAAAGCGGCCTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCTGTGTGCAAACTTCTT
R:
TCAAAAGGCCGCTTTTCATCA
Band lengths:
231-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]