HsaINT0108838 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52246917-52247592:-
Coord C1 exon
chr15:52247458-52247592
Coord A exon
chr15:52247015-52247457
Coord C2 exon
chr15:52246917-52247014
Length
443 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTCTAGCTTTGTTTCCTAGTTC
3' ss Score
5.31
Exon sequences
Seq C1 exon
TTTCATCTCTGTGCCAACTTTTTTCAAGAAAATCCAACTCCTCCTTCTCCTTTTGGTTCAATGATTACAGTTAAATCTGCAAAGCAAGTCATCAAGCCAAACAGCAAGCATTTCCGGACCACAGTTGGGAGCAAG
Seq A exon
GTACTGAGAAGGTGTTTGAGAGTGAGGGGTCTAAAGGCAGGGCCAGGCCCTGGGGAGCCAGGGCACTCAGAGGACCCGCATTCCAGGCCTGGACATGGACAGACGCTGGGGCTCTTCCAATCTAACATGGACTCCACTGCAAAAAGTTCATCGTCGTCATACTTCCACCTCCAAGGCAGCACGCACTGGAGCAAACCACGCTCTTGCACAATAACATGGTTTATTCAGTTCTCTGCTGTCTGGGAGTATTAGTGTTCTGTCCACAACAGTAGGACATGCTGATAAACCACAGTCACGGACTGAAACCTTTCATAATAGGTGTTTATGCATGAGGTTAACTTTTCTTCCTATTGAGTAACTTAACAAGGTTGGGCTGCTTTTTACCGTGATGTAAGCAGTAAATTATTTCAGAGCCATGTTTGATCTCTAGCTTTGTTTCCTAG
Seq C2 exon
TTCCGCAGCTCTCTGTACTTGCTCATGGAGACCCTCAATGCGACGACGCCCCACTACGTTCGATGCATCAAGCCAAATGATGAGAAGTTACCCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATCTCTGTGCCAACTTTTT
R:
AAGGGTAACTTCTCATCATTTGGCT
Band lengths:
230-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development