GgaINT1018777 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8347694-8348683:+
Coord C1 exon
chr10:8347694-8347905
Coord A exon
chr10:8347906-8348511
Coord C2 exon
chr10:8348512-8348683
Length
606 bp
Sequences
Splice sites
5' ss Seq
GCGGTACTG
5' ss Score
4.48
3' ss Seq
CAAACGTTTTTGTCTTTTGGATT
3' ss Score
1.98
Exon sequences
Seq C1 exon
GATCCCAACCAGTATCAGTTTGGGAGAACGAAGATTTTCTTCAGAGCAGGACAGGTTGCTTACTTGGAGAAGCTGCGGTCGGACAAACTGAGACACGCGTGCGTCGTGATCCAGAAGAGCGTCCGGGGCTGGCTGCAGCGCCGCAGATTCCTGTGCTTGAGGCGCGCCGCCCTCACCATCCAGCAGTACTTCCGCGGGCAGCGGACCGTGCG
Seq A exon
GTACTGCTGGCTGATAGGATCGCTTGTTGTTTGGGCACTCCTGAAGGGGTCTGGAAGGTCAAACGCAGCAAAAGTGCCCAGCACGAATTTGGAAGCGTGGTTGTTATGTAAAAATAATCCTAACTGTGGATTTTTATTTTATTTTTATTTTTTTCCTCTTGATTGTAATTCTGAACTTGAAAACGTTCACGTTGTTTGGCTGGTTTGAAGAAAGCACCGTGGCAGACTATCTCACGTTCCTGAGAGGCCTTTTTCCATCCAGCCAAGAAACCGTAGCAGTCATTCAGAGAGCAGACAGGGGGGGAAGATGGCTGTATGTAGGCTTTGAGATGTTCAGGAGGGCAGCATGAGAATAATGCCGAGTGAGAAAAGATAGGAAAGGTGGTGGGTTGCTCCCCCTCCTTGGCACAGCCTCGCTTTTGTTATTCTAGACTGGTTCCACTAGTTTTCATAAGTAAGATTAATGGCTCTGTGTTTCACTAAAAGGAAGTAGTCCTACGTGGTATTCATTGTCATCCAAACTGTTTTCGTGCGTGTGATTTGTGTGGCGGAGGGAATGAGCATAAAACGTCTCCTTTGACCTAAGCAAACGTTTTTGTCTTTTGG
Seq C2 exon
ATTAAGGCAAGCCATAACAGCACGAGCTCTGAAGGAAACGTGGGCAGCTATAATTATTCAGAAGTACTGCCGAGGTTACCTCGTCCGTAAACTTTGCCAGCTCATCCATGTGGCTGCTGTAACAATCCAGGCTCACACCAGAGGATTTCTGGCGAGAAAGAAATACCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
A:
NA
C2:
PF0061222=IQ=WD(100=36.2),PF0061222=IQ=WD(100=36.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAGCAGGACAGGTTGC
R:
TCCGGTATTTCTTTCTCGCCA
Band lengths:
344-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]