RnoINT0097302 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82217255-82219019:+
Coord C1 exon
chr8:82217255-82217466
Coord A exon
chr8:82217467-82218853
Coord C2 exon
chr8:82218854-82219019
Length
1387 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGCTGTCTCTCCACCCAAGGAA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GATTCTAACCAGTACCAGTTTGGCAGAACCAAGATTTTCTTCAGAGCAGGACAAGTGGCTTATTTAGAGAAACTCCGCTTGGATAAACTGAGGCAGGGCTGTATTGTGATCCAAAAGCATGTGCGTGGCTGGCTGCAGAGGAAGAAGTTCCTCCGAGAGAGACGAGCTGCCCTGACAATCCAGCAGTACTTCCGGGGCCAGCAGACAGTGAG
Seq A exon
GTAAGTGGTGAGGAAGGTGGCACTGGGGCTATTTCCCAGAGCTCCCCATGGAGAGCAGCTAGGTCACAGGGCCTTCGCTGTCCACGTACCCAGGAGAGGAGGAGCTGCTGGGGACAAGACCCCTTCTCTTGCTCCGTGGACACAGGTGTGGGTCAGAAGCCCCCTCCAGTGGCTGTGAGCCTGGGTATGAGAAGGGCCTGTCCTGTGTGCCAGCTCTCCTACAGTACAATATAGAGATTATTTCATGGTTATTTTACTTATATTTCTTGGCCATTCCTAAATCTCCCTCGTCGTGGATCCCTCCCCTTCCGTACACTCTGAAGAGAAGAGCCTGTTTACCTCCGATACTTCAGGCAGACGGTAACACGTTTTTCTGTGTGGAGTCAGATAGTAACTATTGGAGCCCTTAACAGTCATGACCTCTGATTCAGCTTCTGCCGTTATAGCCTGAAAGCAGGTACAGTAGTCTTTTTTTATTCGTAGCTGTAAGAAAGGGCCTGAGGCTTGACACTTTATAAAGAAAAGAGATTTGTTCAGACCACAGTTCTGGAGTACGAATTGTTTTGGCCTCTGATAATGGCCTCTATTGCTATGACACAGTGTGACTGAGAAAGTAGCCAGAAACAGCCATGTGGAGGAGAGACCAAGTGCCTGGGGCTTCCTCTCTCTATATAAATTCACTCTCTTGGGCAACTGGGTCAGAAGAACGCTGGGTTTAAGGCAAGGCTGGGCCGCATAACAAGTACTAGGCCAGTCAAGACTTCATAACAAGACCCTGTCTCTAAATAAGTAAGGGCTGGAGAGTTGGCTCTGTAGGGGAGAGTGCTTGCTACAAGGTGTAACCACTAAGAACAGTTTGTATCCAAGCACCATATAAAAACAGCTGAGCTTGTCCACACAGGCCTAAACCAGAAGGCAGGAGGACGGCTAGAGCTTGCTGGCCACCGGCCTGGCTCCAGGTTCAACAAGAGACTTTGTCTCAAGTGAATTAGGCAGAGAGTGAGAGTCGGAACATCATGTTCTCCTCTGACTCCAGATCTGCAGCTCCCAACCCATCTTCCACAAATGAATGAATGAACAAGTAGGGTTCCGGGGTGCTGTCTCGTCATCACAGTCTCTGTGCACCTGCGCTGTGCGCCTGCACACACGTGTGCACCTGTGCACCAACTGGGCAAGCAGACGCTGTGTCGACCCACATGGCTCCCCAGCGCCACACAGTGTCAGGGGAAGCCCACACAGGCCTGAAGTTGCATCAGGATGAACTCATTGATGGTAGAGATGTTAGAACCTGAGAACCTCCCACCCCTGGCACTGAAAGGTGCCGCCCACTCTCTGGTTCAGGCTGAGGCTCTAGTCACCCACTCACACTGCTGTCTCTCCACCCAAG
Seq C2 exon
GAAGGCCATCACTGCCACTGCCTTGAAGGAGGCCTGGGCAGCCATCATCCTCCAGAAGCATTGCCGAGGCTACCTGGTCCGTAACCTGTACCAGCTGATCCGTGTGGCCACCATCACCATCCAGGCACACACCAGGGGCTTCCTGGCCAGGAGGCGGTACCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
A:
NA
C2:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAACCAGTACCAGTTTGGCA
R:
GTGTGTGCCTGGATGGTGATG
Band lengths:
342-1729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]