GgaINT1018783 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8350872-8352133:+
Coord C1 exon
chr10:8350872-8350935
Coord A exon
chr10:8350936-8351952
Coord C2 exon
chr10:8351953-8352133
Length
1017 bp
Sequences
Splice sites
5' ss Seq
AATGTATGG
5' ss Score
3.37
3' ss Seq
TGCTTCGTTGTCTCATTTAGGAT
3' ss Score
10.83
Exon sequences
Seq C1 exon
AGAAAATGGATGACCTCACCAAACAGCTCTTCGATGATGTACGAAAGGAAGAAAGTCAGAGAAT
Seq A exon
GTATGGAAGCAGAATTTCATCTGTTTGAAGCAACGTTTTGGTGTTTTTTTTTCCCTCTATCTTTGCTTTTCTTTTTCCTGCTGTAATTATGATTGCATCATTTATGAGTCTGTCAGCATTCTTGAACAGTGATGCTCGTTCTGACATACTTTATGTGCCACTGAAGATGAGTGCATGCTCGTGGGTCACTCAGATGCAGGAAGATATATTGAAGGCTTGAGACTCTTCTTGCTTTATTTGTGTCTTTGAGAACTGATACATTCTCAGTATTCAGTCAGGGTTAGAAAAGCAGCTGATGACCATATTAGATTCAGCTTGAAGGAGAGGCAGTATCTGTAAGCCTTTCAGATTAAAGGCGTAGAGGAGAAACCACTTCTTCCCTTTGGAATGTTATTTGTAGTGTTAAAAACCATGCTGTTTAGCTACGTATGTGTGATGCTTTGCAGTATGTCACTATCATTTAACACTTTACGAGACGGGGAACCTTGGGTACCAAATAAGTGCCATCCTCAGGAATTTGAAGAGTGTAATAAGTGGCTGTTACTGAGGATTGGAAGCTGTATGGGACTTCAGCTCAGTCTGATTTCAGTTTGACATCAAACTTTTCTGTTAGTTTTTCTGCATTTCTCACTAGCTGTATTACATTGGAAGCCAATCCATTCCAGCAGGGGCCAGTAGATGCAGGGCTTTCTGCTGTGTCTTTCTTCAGTGCTTAACATGGGCATAAATGTAGCAGAGAGCTATTCAAGTAGGCGGCCTGTCAAAGAATGAGAGTTTTAGCCTTTAAGTGGAGTGTCCCATCTTGAATTCAGTCCCAAAATCTGAATAGGACATAGGGAAATCCAGGGACATTGGTATCCCACTGTCATCCATTTTGTAGATTGGCTCTGATGACCTAGCCTAGCATTTTCAAGCCATCATGGTTCATTGACGTTTCCTTTGCTGAGGCACATCCTTTGAGTTAAAAGAAAAACAAAGCCCACTCTTTTCTTCTGAATGCTTCGTTGTCTCATTTAG
Seq C2 exon
GATACTTGAGAAAAACTTCCAGAACCAGAGACAAGACTACGAAAAGGAAATTGAATCGCTCAAGGGAGAAATAAAGGTTCTCAGAGAAGAAAAAACGCAGCTACAGCAACAAATTCAGCAAGAGATGAGCATTCAGGATGACCTGAAAATGGAAGTAGGACAACTTACAAAACAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGACCTCACCAAACAGC
R:
TGCACTTGTTTTGTAAGTTGTCCT
Band lengths:
238-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]