RnoINT0097308 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82222697-82225506:+
Coord C1 exon
chr8:82222697-82222760
Coord A exon
chr8:82222761-82225325
Coord C2 exon
chr8:82225326-82225506
Length
2565 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
TTTCTTCTTTTACCATTTAGACT
3' ss Score
8.26
Exon sequences
Seq C1 exon
AAAAAATGGACCAGCTCACCAGGCAGCTGTTTGATGACGTACAGAAAGAAGAACAGCAGAGACT
Seq A exon
GTAAGAAATGCTTCCTCGAGCCCCCATGCCCCTCTCCCGTCTGTCCCATCCCTTCCCTTTCCTTCTCCTTTCTCTCCCTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCCTCTTCTCTTTGTTTATGATATGGTCCCAGGTATCACTGGCTGGCCTTGAACCTCCTACAGAGCCTAGGATGTCCTTGAACCCCTGACCCCCTGCCTCTCTGTGCATCACCACCGCTGGGAGTGGAACCTGGGGCCTTGGGCTCACTAGTCAAGTCCTCCATCAACAGAGCTACATCCCCATCCACTCTGCTCTTTTCTGACTCGCTTCTCAGCTTGAATCTAGTATAATCCAGATCCCGGCAGGTAGAGCATGGATATTTTTAAGAGGTGGGATTTTTAGAATCTCAAGGGCCCAGTTCTAGGGTGTACCACCTCAAATGATGCCGTGCTCTGAACTGTCCATTCTCCTGCTGATAGATCCTCACTGGTCCCATGACCTTGGGTTGGATCCGCCCCCTTCTGATTTCAATCATAAATCATCTGATAATTCTCAGAGATTCAAGTCTGGGCTCCTTTTCTCAGAGGGAGTCCATGGTTTATAGATCTAAGTGGGGAAATGCCAGAGTGATGGGGAGATGTGGAATATTCTCATCATGTTTCTTGGGGGACAGAATCTCAGGGTGCCTGGGATGATGAGGTACCAGTTCCCTATGCAGTTAGCAGAAAACCGTGGTCTAGAGAAGCAGGTGGGGAAGGAGACTTCCAAAGACTGAGGAGCCAGCTGCACCGGTTACCCTGAGCTCCCAGCTGTCCAGCCTCAGTGAGGCTGTGCAGGCCTGTGAAGTGAGCAAAACTGTGTCCCCCTTAGGCCTCCTCACAGCTCCATTTGGGCCCTGATCATCTATCTGTGTATGCTTGGCCCCTGCACAATCCTCAGAGGCACAAACTGCTAGCAGACCCAACAGGCTCGGTCTTAGGATCTGAGGTTTGTTGTGCCTCAGACTCCGGGTTTAATTTTGGTTTTGGTTTTTACTGGCATCTTGAGAATACTATAGGGGCTAAAGATATGGCTCGGCTGTTAAGAACACTGACTGCTTCTTCTGAGAGGACCCAGGTTCAATTCCCAGCACCCATATAACAGCTAACCATTGTCTGCAATTCTGAAATCTGACACCCTCACACATCCATACATGCAGGCAAAAACACCATCACATATAAATAAAAATAAATAATTTTTTAAAAAAGAGAATACTGTAGTCAGTTTGGGGGGGTGTTACAAAGTTTAAAGGTTTATTAATATCTATAAAAAGAGATAAAACAGAAATCTCTGTGGAGCATGGGTCTCTTCCTCAAAGTCTCCTCCTTTGGGCTGTTAGAGCAAATCTACCAAGGCTCTGGGTCGGCAGCCCAGCAGCGGGAGACTGCAGGAAGCTCACAGAGCCCCCGGGACTGCCTCAGTTCTGACTGGACCCTGTGAATAAGCAAAGTTTGTCTGTGTCATGTGTCTCTTGATAGTTGTCATCTTAGTTCGTCCCTACTTGTTCAGTTCAGGGACGCTCTCACAAGGAATTCAGTTTCCACATACTTTGGGGCACCTTGCTTTGCCAAAATATATTCTAAAATTCTTAAAACAAGGAGTGGAGAGATTGCTCACTTGCTAGACAGCCAGAGTGGGAGTCGCAGCACTCAAATGAGTTGGGTGTCCAAAGACACCTGTGTCTCTAACCCGGAGGGGTGTGATCCCTCTTCTGGCTTCCGTGTGCAGAGATGCAAGCATCAGGGTACACAGTGCATACACTTACAGACACCTGCTTTCACACACATAGACATGTAGATACACAGACAGACAGACAGACAGACAGACAGACAGACAGACAACTTTTAAATTTCTTGGAAGGCAAGATCTCTGGATATAAAAATGGTCCGACTGTTTATGTCCCTTATCTGAAGCTTAGGGGCAGAAGGGTTTTGGTTTTAGTTTTCCATATTTTGGAGACTTGACTTAGACATTACTAACAGAGCACCCCTCCTCCCACAGTCCCAAATCCTAAATGTTTCAAAGATGGAAAGCTTTCATTTTCACACTGGTGGTGCGGTCCTGGATTTTAGCATTTCTGATTTAGTTTGGGGAATTCGGAATGCTCCGCCTGGATTTTTAAGGACTAAACCAGAACCCTGGGACGTCCTGAGAACTTAGAAGGGCCAGAACTTGACAGAATGTGCCAGGTCTTTGCTGAAGGATGTACATCCCACAGTATGGGACACGGGTATGGCCTTGAGATGGGAACACCTTAGCACCCAGTGTGACTTCAAGTCCAGCATCTCTTGTCCTGTGCTCTGTGATCCTCAGAGAGTTTCTCACACCGGATGATCTAAGACATTGGTTTTAGACTAAGAGAACAGGAAACAAACAGGACCACAGGCTGCTGTGATGGCCACATGGGTCCTAACCCATCTCCTCCTTTGGCGTGGAGGGGTCTCTTCAATATTTACTGTATATTGTCTTGTTCAAAAACTAGAAAACCAACTCTAAGTTAGATTTTCTTCTTTTACCATTTAG
Seq C2 exon
ACTTCTTGAAAAAAGTTTTGAGCTGAAAACACAAGCTTATGAGAAAGAGATAGAGTCTCTGAGAGAAGAAATTAAAGCCCTCAAGGATGAGAGGACGCAGCTGCACCACCAGCTGGAGGAGGGACGGGTCACCTCTGACAGCCTGAAGGGGGAGGTGGCCCGTCTAAGCAAGCAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(8.8=100)
A:
NA
C2:
PF131661=AAA_13=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]