GgaINT1018810 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192400087-192401078:-
Coord C1 exon
chr1:192400925-192401078
Coord A exon
chr1:192400164-192400924
Coord C2 exon
chr1:192400087-192400163
Length
761 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTGTGCCTCTCTTCCCCCAGCTC
3' ss Score
11.14
Exon sequences
Seq C1 exon
GGTAACTGCACAACCTGCGATGGCAGAGATGACAGCAAGGAATATGCCAACATCCGCTCTGCCATGAAGGTCCTTATGTTCACCGACACAGAAAACTGGGAGATCTCCAAGCTGCTGGCTGCCATCCTGCACATGGGGAACCTGAAGTATGAAG
Seq A exon
GTAAAAGGACAAAATGCAAGGGTGTGTTCCACCATGCTTTTCCTCCTTATTCCGTACAGTGACATGGAGCCAAGGTAATGGACCATATCCAGACCACCTGCCATGATACTGTGTTAAGGACTCAAGTAGTTATTGTGATTTGTAAGGATGCTTGATATTATTATGGTGTGTAAGGACAAGAAAGGAGGAATAAATCCACCTGCCCACTCTGCAGGGCTGCCAGACTCTGGTGCACACAGTGGAGACGGGCAGTCCTGTTCAGCCATCTGCAATAGGATGCCAGTACATGTCATCTCCACCTTGCTGTGTCTGTTCCAGCAGTCTGGGGCTGGCAGCCCCTTAAATAAGGCTGTGACATTCACCTCTCCTGAATTAGGGAATTTGGATATGGCCATAGATCATTCAGCAAATCCAGGTTTGGCAAGGGAAGACCAACAGTGTGGTCAAGTGCCTAGGTGATTGGATATGTCTTTGTAAAAGTACCAAGCTGCCCTGATATCAGAAATGACATGTTAATATGGAAAACAGAAGCCACACTTACATCCTAGAAACTTTGTCATCCCATAAGCTGCTGAATACAAGTCCTTTGTTGACAGCAGCAGGACTCCAGCAGCTGCATTAACTTTTCTCTCCTTACTAGTTGTTAGATTTTACATGGCCACCAAGATGAGGCAATGAGGAGAGACCCTTTCCCTTTCCTGTTATTTTCTGCAGAGCTGCATCTCTTGCTGACTGCTTTCCCTGTGCCTCTCTTCCCCCAG
Seq C2 exon
CTCGGACCTATGACAACCTGGATGCTTGCGAGGTTGTGCAGTCAGCGTCACTGATCACTGCAGCATCATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCAGAGATGACAGCAA
R:
ATGATGCTGCAGTGATCAGTGA
Band lengths:
206-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]