GgaINT1020430 @ galGal4
Intron Retention
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3903995-3904313:+
Coord C1 exon
chr27:3903995-3904115
Coord A exon
chr27:3904116-3904209
Coord C2 exon
chr27:3904210-3904313
Length
94 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GCACCTCTGCTCCCACTCAGAGC
3' ss Score
6.24
Exon sequences
Seq C1 exon
GGTCCGTGGACACGGATCGTGCCCTCAGGCAGTGCCCCTGCCCTGTCTGCCCTCGCCAGCTCCAGGGACAAGGTGGATGCATGGCTGAAAGACAGCGAGGGACTGGAGCGCTGCTCGGCCG
Seq A exon
GTGAGCAGGAAAGGGAGGGGTCCCATTCCCATCATCCCCATCTCCATCCTCTCCATCCCCATCCCTGACCGAAGGCACCTCTGCTCCCACTCAG
Seq C2 exon
AGCTGTCAGCGTGCCAGGCGCAGCTGCGGGAGCTGACGGAGATGCTGCAGAGCCTCGAATCCCTGCACCGCATCCCCTCCGCGCCCCTCATCTCCAGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934:ENSGALT00000043335:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGGACAAGGTGGAT
R:
CTGAGTGCTGGAGATGAGGGG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]