DreINT0108901 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28675549-28675873:-
Coord C1 exon
chr12:28675765-28675873
Coord A exon
chr12:28675668-28675764
Coord C2 exon
chr12:28675549-28675667
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
CACTTTGGGCTGTTTTCCAGAGC
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGCACATCTGGGTCTTCTATGGGTGAAAATCTTCAATATGTAAGTCCTGCTGTTAATGGGAAGGTGTCAGCTTGGCTTCAGACCCAAGAACCAGATTTTTGTGGACAAG
Seq A exon
GTATTGTGGTGTTATATTGAACACTAGAAAATGTCAATAGTAATATGCATGAGAACAAAGAAAGGATTTTAAAATGCCACTTTGGGCTGTTTTCCAG
Seq C2 exon
AGCTGACACGTTGTCAGATGGAGCTGAATGAGCTGCAACGGCTGGTTCAAAAGTTGAACTCTCTAGAGTCGGGGCAAACTGTCTATAACGGAGACCTCCAGAGAATGATCAGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGTCAGCTTGGCTTCAG
R:
TGCATGCTGATCATTCTCTGGA
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]