RnoINT0105843 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84989271-84989806:+
Coord C1 exon
chr10:84989271-84989384
Coord A exon
chr10:84989385-84989710
Coord C2 exon
chr10:84989711-84989806
Length
326 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCTCTCCAACACTTCTTCAGATC
3' ss Score
7.76
Exon sequences
Seq C1 exon
ATCACCAAGGGGAAGGTTCATGGCTCCATCGATGTCCGGCTATCCGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTCGACACAGAAGACAACATTTACCACCTAAAG
Seq A exon
GTGACATTCCTGAGGACAGAGTGTTGTGGGTACCAGCCTGGCAGAGGTGGTCAAGGCAGAAGCATAGTTGCCGAGGGCTCTTCTTAGAGTTTGAGGAGAAGAAAGTTTCTATTGTGCAAAACAGCCAGGAGCCAGCCCACTCTGGTGGCTGGCTGTTCACAGATTTAGGACTAAGAACTCTGATGCTTGGAATGTCATCCTCCGACTGTGATAGGGTTTTGTGCAGACTGGGTGCTCTAGGGAAATTCCCTGCATGCCTGGAGACCTGATATTTTGCTCCTGGGGAGCAACCCCTCCCTTCTCACCTCTCTCCAACACTTCTTCAG
Seq C2 exon
ATCAAATCTCAGGACCTGTTCCAAAGCTGGGTGTCTCAGCTTCGAGCCCACCGTTTGGCCCAGCGCTCGGACCTGCCCAATGCCACTCACCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(51.4=100)
A:
NA
C2:
PF154091=PH_8=PD(23.6=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGGGGAAGGTTCATGG
R:
CTTCCGGTGAGTGGCATTGG
Band lengths:
208-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]