BtaINT0105972 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71417552-71421077:+
Coord C1 exon
chr4:71417552-71417665
Coord A exon
chr4:71417666-71420909
Coord C2 exon
chr4:71420910-71421077
Length
3244 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTCGACCCAACACAATCTAGGTG
3' ss Score
4.38
Exon sequences
Seq C1 exon
ATAGAGAGAGAGAAGCTGCATGGCTGCATCGACGTCGGGCTCTCGGTGATGTCTGTGAAGAAATCATCCAAGTGCATAGACCTGGATACCGAGGAGCACATTTACCATCTGAAG
Seq A exon
GTGAGACTGCTGCCCAGGTGCTGTCCCCCTGTGCACAGATCCTTCATGTTGCAAAGGAATTGTCAGTTACAGTACCACTGGTGATGCGTTTTGAATTTCAGAACATCCAGCCAACATGTAGAAGATCTTCATTAGGAAAGTATTTCTAAGGATCCTGTTGCTATCTGGATGGGACAGTTCTTCATTGTGTAGGGAGTCTCTCACACTGGGACTCAATAAAATAAATTCAACATCCTTGTCTCTTCTCCCTCATATCCCTCCTCCATTGTGACTATGACATTAGTAACCTAAAAAATACTTCATGTTTTCAAATACAAACTCTCTCTACTCCCAGGCAGTACCATCTTTAGTGAAGAACCATTTGCCGTAGAATAAAATGTGTTTCCTGAAATATAATATGATCTTTAGTCTGTGAAGCTCTGGCTTACAACGTCAACTAACTTTATAGGGATTAAAATTCTCATACCACAGTGATGTTAAAAATTTTTCTCCTAAAGGACGGGTCTCTAAATAGTGTCTCTGAAATGGAGTGCTTCACTCCATTCTTCTGCCCCTTCTGCTGCAGGTTGTGTAGATAATTAAAAGCATGAAGCAAGAGCTTTGGAGATCCAAATCTGGTTCAGATCTTGAACACCTGACTACTTACTTGCTCTCAGCGTTTGACAAATTATTGAATCTCTGAAAGTCTTAGTTTTCTCACCACTTCCTGCCCCCACAATGGGAACTACTTTGCTCATCTTGTGGAGCTGAATGTGGAAAACTTGGTGTAATGCCTGACCCACTGTAAGCTCAATAGGTTCATTTATTATATATAATTATATATTAGGTGTTACCTTAGGTGTTACCCGAGGGTTAGAAATTAATTGAGAAAACGTAAGAGTCCTTTCTTACTTGGACGAATTACTTGGAATATTGGGAATGGGGGCTGAGAATTGGGAAAATAAAAGCATGAGATTATGATCTTCACATCTTAGTGTATTACTGTCCTCCCCATGACATGTCTGTGGTACTTGGGCAGATACATGTTTAGCACATACATGTAGTTGATGGACTGCCCAGGACAGTCAAATCTGTACTGTTTTTTAAGCCTAAACCCCTGTACTTATGGGTGTAATAACTGTTTAGAGCAGGGTTTCTCACCTTCAGCACATCTGGAGGGTGGGCTGGAAACTCCTTTGCCATGGGGGCCTGTCTTGTGCATTGTAAGATGCCCTGGCCTACACCCACTAGATGTCAGTAACAACCCTCGTCTAGTTATCACAGCCCCCAAATGTCTGCAGATGTCATCAGACATCCCCTGGGGTGGTCACAATACCCCTGACTAAGAGTAACCAATGTGAATCAAAGGAGGGAGAGACCTATAATCTCTCTTAAAAAAAGATTTTTAAAAAATCTTTGAAGGTTTACCACTTCACCTCCTCTCAAGTAATTTCTCTGTGTTCTTCCAGTAACTCTTATTTCTCTCTGTTGACATGGTCAGGAAATAATACAGTTTTGTTCATCCACTATTCTAGTTAACAGAGTAAAAGCAATGATTAATCCCTAATTTTTAAAGAACTAGAATGCCTCGAAATACATCAAATACTAATATCGTGATAAATGCTGGTTAATATTTCTCTGTGTTGATTCACTTTCAGTTCTGTTTGTGTTTCCTGTCCATTCTGACCATTAGTTAGGACTGTGAGAGCAGGTGTGTGGACTTCTCTGAGGTCCTGGTTGATGGTCTCAGAGTCGGACAGTTTCTAATGTGAGCCGTCCAGTCCCAGTCTCTTCCTGTGTCATAGAAGGGGGTCTGGGCAGCAGAGAGTTAAGTAGCTGTACACCCACCGTCCTGTGACTACCTAAGGGGCTAATGCAGAACCCTGGTCAGTTATTTAAGAAAGTGCTTTTGTTCTTCTGCCTCGTTTAACCCAGTTAAAAAATGGGTCAAGGGGAATGCTCTGGGCACTGATTTTTAATGGCCTCTGATAGTAGACTAGAACAAAGAATGACACAAGATTCCTATAAAATGCCCAGCAGCAAGGTCTGGGAAATGAAGTACATTTCAAGAACATAATTTAAAGGAGGCAAATAGATGTGAGTCTGTGTTGCTTCTACTTGTAAATGGCACATCCAGTAGAACCTGGTGGGGTTTCAAGTCTTGTGTGTATTTCTAACCAACACAACAAACATAGATGTCAACCAAGCACTTCCTAAATGAAGAATGTTGCTGACATTTATTTCCACATCCTTGCTCTCAGTCACAGCTTTAGTAAAGATTTTAACTGAATTGACCTGGATTTTTCTTCTTGGAAGTTAACCTACTGAGTATTCTTTTGGAGTCATTTATATTGCCTTTTCATGAGTCTCTGTTTTCTCATATATAGATGTCTATCACTTTTTATTTTGAAAGTATTAATGTACCATCATACACACATAGAAATATTAACTATTAAGAGATATTTATGGTGCATAGGTGCTTCATATATTCTTTTTAGTACTCTATGCACATTTGATGTATTTTATAATAAAAGTTACTACATACAAACATTATTCTTCATAGAAATTATACATTGATAGTCAATCACAGAGAGAATGGCTAAAAGTTTGTGTTTGTGTGTTTGAAAAATCCTGGAAACCACTGATAATACTTTATCAGACTTTTGTTTTCTAAGAGTGGGAGAAATGTTCTTGTAAATAACCTTCACATTCATTAACATGTATTCCTCAGTAACATTTCGTTGTCAGAGAAGATAAACAAGGTTAAATATTTCAAGAAGAATTTATTCATTCTCTCCAGTTCAGAGAAGATTGATCTGAAAAGTCTGAATTAGAGGTTTTTTATTAATAAAAAATGGTGTAATGTTTTCAGTGGGGATATGAGAAATGGGGACAGGAGAACTTGGAACTGCTTTAAGAGACGGATAAATATCCTTTTTTCTAATTCTTTTTTCTTCTTGTAAGAGATGGATAAATATAAATTTCAACTTGCTTGTTGCTTAATATGTCTTAATAATAGCATAACAGTTGGCTGTTTCATAGAATGCTTACATGTAGAGTTTATGAAGACCACTCTTACTTTCCATCTCCTACTCCATAGACTTGCTCCATACACTACATGAGTGTACACGAAGTAAACAGACTGGTACTTCCACAGTTCTACGTGTGTCAGGATGAAGAGGGGCCAGGAATGACCTCAACGGGATGACTAACTGTTTCTTAGATGAGTGACACTCTTGTGTCCTTTCGACCCAACACAATCTAG
Seq C2 exon
GTGAAGTCAGAGGACGTCTTTGATGAGTGGGTATCCAAACTCCGCCACCACAGAATGTACCGTCAGAATGAAATCGCCATGTTTCCACACGAAGTTAATCATTTTTTCCCAGGATCTACAGTCCCAGACTCCGGTCCTGGAGTCATGGACACCATTTCAAGTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]