DreINT0108835 @ danRer10
Intron Retention
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21524981-21528716:+
Coord C1 exon
chr16:21524981-21525094
Coord A exon
chr16:21525095-21528551
Coord C2 exon
chr16:21528552-21528716
Length
3457 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
TGGTCTCCTTGTGTTTTCAGATT
3' ss Score
10.5
Exon sequences
Seq C1 exon
GTTGAGAAAGGAAAGCTCCACGGCTGCATTGACGTTGGGCTGTCCGTCATGGCCATTAAGAAGAAAGCCAAGTGCATTGATCTGGACACTGAAGAAAACATTTATCACTTGAAG
Seq A exon
GTATCACAACAGTTATAGTATTAGTCTGGCCGCAGAATGTCCTGCGGTTTGAAGAAAAGCATTAGAGATCATCACAATCTTGCAGTTTTACTGGAACATGTTACATTATGATGGTACGGTTGATTTGCTGTTGCCTTGATTCAAAGAATCAGTGAGACGTTATTTGCTTTCAATGTAGTTTGGTGGCTATTTGACAGTTTTGATGTAATGCTTTTAAGTAAATATAGATTTTTTTTGTGATCTCGTTAAGCATAACTAAGTACTGTATATGTAAAGCATTATTAATATGGGATTTTTTTATATTTGCTGTAAATTTAAATTATAGATCTAATCTCAATGCAATTTACAATTAATTCAATTTAGACTTATATTTTCAGTGCAAATGACCCTACAGTTTAATTCTCATAAAAGGCTGAAAGACTATTTTATTAATTATATTATTATATTTTAATATACAATTTTGAAATCAAATATGTCTTAATGTATCAAATTTGTAATTTATTTAAAAAATATAAAAAGCTATATTAAGAAGACCAATGTGTATTTATTTGGTATATTTCTCACAATAAAACATACAATATACACTCACCTGCCACTTTATTAGGTCCACCTTACTAGTACTGGGTTGGCCCCCTTTTGCCTTTAGAACTGCCTTAATCCTTTTTGGCATAGATTAAACAAGGTACTGGAAATATTCCTCAGAGATTTTGGTCCATATCAACATGATAACATCATGCAGTTGCTGCAGACTCGTTGGCTGCAAATCCATGATGCGTATCTCCCATTTCACCACATCCCAAGAGTGCTCTATTGGATTGAGATCTGATGACTGTGGAGGGAATTTGAGTACAGTGAACTCATTGTCATGTTCAAGAAACCAGTCTGAGATGATTCACGCTTTATGACATGGTGTGATATTCTGCTGGAAGTAGCCATCAGAAGATGGGTACACTGTAGTCATAAAGGAATAGACATGGTCAAAAACGATACTCAGGTAGGCTGTGTCGTTGACATGATGCTCAATTGGTACAAATGGAACCAAAGTGTGCCAAGAAAAATCCCCCACACCATTACACCACTATCTTGAACCATTGATACGAGGCAGGATGGATCCTTTCTTTCATGTTGTTGACGCCAAATGTTGACCCTACCATTTCAATGTCGCTGCAGAAAAATCAAGATTCATCAGACCAGACAACATTTTTTCTAATCTTTAATTGTCCAATTTTAATGAGCCTGTGCAAAATAGCCTCAGTTTTAGCCTCAGTTTCCTGTTCTGAGCTGTTCCTAGCACACGGTGTGGTCTTCTGCTGCTGTGACCCATCTGCCTTAAGGTTCGACTTGTTGTGCATTCAGACATGCTCTTCTGCATACCTCGGATGTAACGAGTGGTTATTTGAGTTACTGTTGCCTTTCTATCAGCTCAAACCAGTCTGGCTATTCTCCTCTGACCTCTGGCATCAACAAGGCATTTGCATTCACAGAACTGATGCTCACTGGATATTTTCTCTTTTTTATGCTATTCTCTATTTGGTCTATAAAAAGTTGTGTGTAAAAATTCCAGTAGATCAGGAGTTTCTGAAATACTCAGACCAGCTATCTGTCACCAACAACCATACCACTTTTAAAGTCACTTAAATTACCTTTCTTCACCACTCTGATGCTCGGTTTGAACTGCAGCAGATCGTTTTGACCATGTCTACATGCCTAAATGGGTTGAGTTGCTGCCATGTGATTGGCTGATTAGAAATTTGTGTTAATGAGTAGTTGAACATGTGTACCCAATAAAGTGGCCGGTGAGTGTTTACTTCATATAACGCAATTAATGTTGACTGTTACAATTAAATACATATACATTAGATTGAAAAACTATTAAGTATTAGGTGAAAGACATACATATTTAAATGTATAAACATGTTTTGTTGGAAAACTTGAGTTGGACTAATAAAAGTCTCATGGATTGTATGAGCTGCATGGCTTTTACTGTTATGTTCAAAGCTTTTAGCTAAACATTAAAATCCCAAAACAGATTAACAACAGCTTGACTGCTTTAGAAACCTCAGCAGAGGAGAGATTGATTCTAACATAATTTTGCTCTCAAACAGTGTATCTTCTTTTAAAGAAAATCTTTTAAGTGGAGAAAATAGCTTTTGACGACCACTGTTTGTTTTTCTCTAAGCGGGGTTTGAACTCTTGATCTCAGGAATCAAAGGCCCCGTTTACACTAGTGCGTTTTAGTTTGAAAACGCATAAGTTTTGCTACGGTTACGCCATCCGTCCACACTACGCCGGAGTTCTCGAGCGACGAAAACGGAGCGTTTCGAAAACGCTGGAGAGGCCGTTTTCATTCTAAAACGCTGCTGCTCCGTCTCAGTGTGGATGGGGAAAGACGGAGACATCTGAAAACAGAGGCGGGGCTGCAAACGTTCGCCTATCTGATTGGGGCTTTTCCTCAATATTAAGTAGCCCACACACAGTTCAGTCACGCATCCTCTTCTTGTAAGTTAAGACTTCGCAAGTTTGATCAGCTGCAGTCTCCCCCTTCTCAGTTTGATATGGAAAACATACCGAGGACACGGGTAAATCTTCAAAGGGAACAGTGTACTTTATAACTTCATTCACATCACCTTGGCTACGTTGTTTCACTTTCTCAACAATAAAATGTAAACATGATTTAAGGAACTGCCTATTTTCTTTTTAATATTAGCAACTTAACAGACAGCAGAAATGTTGAGGCGTCGTGCTGCATATATGAGCGTCATCTTCACTGTTTGGATATTTATAACAAAACGGAGCCTATAACAACTGCCTCCTTTCAATTTCAGTGAAAATACGAAACGCACCCTCTCTTTTGCTGAATATCAGTTTTAATAATCGATACTTATAAAAGTATAACATACAATAAGTTTATACATTGTAGGAAATAAAGGCAAGCGATCAGTCAATGTACCTGGATTAATCATTAACTTATCTTTGCGCTTAACCAAAACATGTTACCCGTGAACAAGTAACTTAATAGATTACAATGATCAAAGTCAGGGAATTGGCCTATGTCGTTAGATAAAGACAACAAGATGAATGAAATATCACGTTTAGCAAATATAGGGAGATTAGATCCAGCGGGAGATGCTTGATGAGCAGTCCGACAAGCAGAGCTCTCGTCTGGGTAGAAATGCTGGAGCGCTTGCCCGAGAGTGTGTGTGTGGTCACGTGATGTGCGTTTTCAGCGTTTTGGTGTGGACGGAGAGCTGTTCAGAAACGCTGGGTAAAACGCGAGTGTGGACGCGGATCGTTTTCATTCTACAACGCCGTTTTAAAACTAAAACGCACTAGTGTAAACGGGGCCAAAGTCAGTGAGGTCACTTTTCATCTGTAGAAAAAAAAACTACTTGTGAATTCTGCTTGAGGAGGTTTCCTTTATGCTTACCCTTTAACTGTGGTCTCCTTGTGTTTTCAG
Seq C2 exon
ATTAAATCCCAGGAGCTCTTTGATGAATGGGTCTCTAAGCTTCGTCACCACAGACTTTACAGGCAGAATGAGATCGCCATGTTCCCTCATGAGAAAGCGCTCTTCCACCCTCATTACCCCCTCACCTCCTCTCCCACGATACCTGACAGTCAGGCCATCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482:ENSDART00000145886:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=30.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]