RnoINT0105779 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80085109-80089025:-
Coord C1 exon
chr4:80088912-80089025
Coord A exon
chr4:80085277-80088911
Coord C2 exon
chr4:80085109-80085276
Length
3635 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTTTCTAACGCCCTGCAGGTA
3' ss Score
9.88
Exon sequences
Seq C1 exon
ATTGAGAGAGAGAAGCTGCACGGCAGTATTGACGTGGGGCTCTCCGTGATGTCTGTGAAGAAGTCATCCAAATGTATAGACCTCGACACCGAGGAGCACATCTACCACCTGAAG
Seq A exon
GTGAGGCTTCAGCCAGGGCCTGGCTCCCGCCTCCCAGCCACTGCCAGGGCTCTGGTTGGTTGGGAAGTTGTGTGAGGCAGAGTCTTGTTATCTTTCTCACCCTGGCTTCAAACTCCTAGGCTACAGCAGTCTCTAGCGTCAGCGTCCCGAGTCTCCAGGGCTGCAGGTCCTACTCCCCCAGCTTGGCCATGCAGAGCCATTTTACTGAGATGGACGGGCCATCCCCATACTGCTGGTGATGATTTGGGGACATCCATTCAATGGGTGGGCAGTTTTGATCACCAACGTGTCCCTAAGGGATACTGTTGATGTCAGGATGGGCCAGGTTTTCCTTAGCTGTGTAGAACCAATCCTCTCTTCACACTGCTTAAAGAGTTAGTGTCCTTCAATGTCCTTGTCACCTTTCCCGAATGTTACCATTCCTCCCCAGTGACAGCAATCAGTGACAAAAGCACCTTCATGTTCCCCTCCCCCAGGCTGTGTGTCTTTTGTATAGAATCATTTACCCTAGATTAAAATATGTTCTCCGAAGGATAGTGTTTACCGTGTGGAGCCCTGACTTATGACTTTAGCCAATTTTATAAAGACTTTGTTAGAATCCTCATATTGTAGTGAAATGTCATTTTTTTTCTAAACTGGGAGTTGGGAAATCTTAAGGCTCAATGCTTCCTACCCACTGCCTTTCTCCTGAAGGTGGGTGACATCATAGAAACATCAAGCGCGAGGCCCAGGGCAATGTCAGCTCTTATGTGATTGCTTACTGGCCCTTTAACTTTGACCAGTCATTTAATTCTTGAAAAGCCCTGTCTTGTTTTTGTTTTACCCCCACCACATGTAAAAATATGAAAGAGTATCTGTTTAAGGTTTGTCATAATTCCTTGGGGGGTCAATAAATTTAATAAGTTTAATTGTTGTTTAATGGTTAGGCAGTGCCTGAATGGATATACGTTGAGATTTGCTTAGTCAGCTTGCTTTACATTTAGGGAATGGGGCTGAGGGCTGGGATAACCGAAGATCTCACCTGTCCCTGTCCTCACCTAGCATGTGTGTCTCACATCTGTCCCCTGACCTAACCCTGAACTCTGGGTCTGGGTTAGTTCAGTGTGTAAAGCAGTTCCCCTTACACCGTGACCTGAAGATGCTTTGCTGTGAGAATGTCCCAGGTGTTAGTTAACAGCCTTTACCCACTGGACACCAGTGGTGTGTCATGTGCTAACAACGTGCACTGTCCTCAAGTGTTTCCAAGTGTTTATTGACAGGGAAAATCTCCTCAGTGAAATAACTGGCAAAGGAAAGGAGGGGAAAGCCAGGAATTATTTATATAGTAATTAATAATTAACATTATAAAATTTATAATTTAATAGTGAGTATAATAAATTATATATTGGTGTGTGTGTGTGTGTGTGTGTTGTGTGTGTGTGTGTACACACCTTACCCCTCTGCTCCTCCCTCAGTGGTTAATCTCTGCTGGGAGAGTTGGCACTGTTTACCTGTATTGGTCCCATGAATCTTCCTTCTGTGTTTTCACATGGTCAGGAGATAATGACTCTGCCCATTTGTAATTCTTTTTAGAAAAATGAAGCTATCATTCATTTCTACTTTTTAAAGACTTAAAATGTCTTAAGATACATAGGACTTGATATCATGAGACAGAGCAATAATTCTCTTATAGCTCACTGTAAGCTCTGCTTGGTTTCTCATTCATTCCTGAGGATCAGTTCTGACTTGGAGTGTAAGGGATGTTCGCCGAGGTCTCCCTATCCCGTCTTCCCCTTCCTCCCACCTCACTCCTCCCTACCATCAATACAAGGTCTTGATGTATAGCCCAGGCTGGCCTTGAACTCACAAACCTTGAGTACTGAGGTTACAGGCATGCACCACCAAACCTAGCTTTATTCTTTCTCTCATTTTATACCCAAGAAGTCTGGGCAGAAGAGCAGTGGTCGCCCAGCCACAGTCCTGGAATTGCTGCAGGGCCTGTGACAGATTGTGGTTGGTTATTTAATAAAGTACCTCGTTTCTCTTCTTGTTTATCCAATAAAAAAAAATGAGTCAAAATGAGCACCTTGGGCACTGGTTTTTCAGGGCTTTGGGAAGCAGATCAGTGCAAGGACGACAGAAGATTCTTACAAAATTCCTTTTAACCACATCTGGGAAGTGCAGTCAGTTTAGGAGCTCACAATGCAGAAGAGACAGATAGGTGTGTGTGTGTCTGTGCTGTGGCTTCCTACAGACTTGTGCTAAGGAAGAGCCTCAACCTTCAGGTACCTTGAGCAACATGAAGTCCCGATTCTCTGAGCTCTGCTACCTCTCTCTGTCTGCGCAGGCTCCTTCCCAGCTGCAGCCGTAGTCAGGATGGTCACAGCACCGGCCTGGCCGGCCACTGGCCTACCTGGCATATTTGGGGGTTATTTTAAATTACACTTAATGAATCCAGATCCTAATCTATAGGCATCTCACTTTTCACTTTGAAATTATGAGTGTGTTTGATACACAAAATACTGGCTTAAAGATGTCTGTAGTATAGAAGTGATTGCTTCATTTCTTTTAACACTTTTATGAGCATTTGAACTCTTTCCTGAGAAAAGTTATTAGTTACAGCAGGCATGGTGCGATGCCTATAATCCCAGCATTTAGGTAGTTAATACAGAAGACTTTTCATAAGCTCAAGTCCAGCCTGGGCTACATAGCAAGTCTGACGCCAGTCTGTGCGACACAGTGAGTGTAGTACAACACGCTACACGGTGAGAGGCATATTGCTGGGCTGCATGACAATATACCACCTCAAATAAACAAATAAAAACTGTCAACTAAAACATTCTTCCTAGAAAGTGGATATTTATATTTCCTTTGCTGGGGAGGGGATGGATAAATATTTGTATAATAATAACAATAATTGGGGGCTGCAGAGATGACTGTGGTTCCAAAGGTCCAGAATCCAATTCCTAGCAGCCACATGGTGGTTCACAACCAACTGTAATGAGATCTGATGCCCTCTTCTGGCACACGGGTATGCATGCAGATAGAGCACTCATATATATATAAAATAAATAAATCATTTTTTAAAAAAATAACAAGAGCAGTACTCTGCAATGCTTTGTCAGATACTTTTCCTTTTTCTGAAAGTGGCGAAATGGTTTTCAGTTGACCAGCACGTGTGTTAGCAGTTCCTTCCAGCCATGTATCCTGCACAGACTAGACGAGCATAGGCCACTACCTCAGGAAACACCTACTACGTCAGTTCCATTCAGACTGGTTCATAAAGTCTGAGCTGCAGGCATTTAAGTGATGAACAGAACTGATACATTCAGCAGGGAGTGGGCAAGTCTCAGGCAAGAGAACTTGGAAGTATTTTAAGAGATAAATGCGAGTTTTAGTTCATTTGTTGTTTAATAAAAACTAGCCCTGTTTGCATTCTTAGAAGTTGTGTGGTGGTTAGAACATCTCACAGGAGACGAGTGTGTATTCTGCGACTGTGCGTCTTCCTCGGGTGGTCTCCGAGACCACATAAATGAAACCAAGACACAAGTGCATTTTCTTCTTTTTCACGTCGTTTTGATAAATAACTGATCCCTTGATCCCTTTTTAGCCAGTGGCTGGCTCTCTTCGACCTCTCTCTTTCTAACGCCCTGCAG
Seq C2 exon
GTAAAGTCAGAAGACGTCTTTGACGAGTGGGTGTCCAAGCTTCGTCACCACAGAATGTACCGGCAGAATGAGATCGCCATGTTTCCCCGGGATGTCAACCACTTTTTCCCAGGGTCCTCTGTCACAGACTCTGCTCCGGGAGTATTCGAGTCTGTTTCCAGTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]