GgaINT0097793 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31609641-31610484:-
Coord C1 exon
chr2:31610371-31610484
Coord A exon
chr2:31609812-31610370
Coord C2 exon
chr2:31609641-31609811
Length
559 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATATCTGAAATTTTGTGTAGGTG
3' ss Score
6.49
Exon sequences
Seq C1 exon
ATAGAGAGAGGGAAACTTCATGGCTGTATTGATGTTGGACTTTCTGTCATGTCTGTAAAGAAATCAACAAAATGTATAGATTTAGATACCGAAGAGCAGATATATCATCTGAAG
Seq A exon
GTAAATCTTTAATGTTGTTCAGACTTTGCTTCCCAAACTGTAGGAGTATAACAACATGAAGTCTGTATGGCGGAGACCGTGTTTATTTTTAACAGCAGGAGGTCTATTAATTTCACTAATAGCTTAATTTTTAGTCTGAATGGACTAGTTTTATACTTTATAACTTGAGAGGCTTTACTGTACTGTTCCACAGTCAGGTCCCCATTACATTTGATGGTAGTTGAACCTTGACGAAACCTCAAACCTTGCAACTAAGAAGTGACAATTTTTGTTTATGTTGCTTTTTTCTCTGTAGAAATTGCTAAGCAGTAGGTTTTGTGTTACAATCATAGCTCTGATTACTGAAGTTCCTTTTTTGTTTTTACTTTATCCAGTGACTAATTTTGTCATGCTTAAGCTCATGCATAGTATCTTCTAGTAGGAGCATATTTAGAAAAACTTTCCTGATATTTTTCCAATAAAAGTCAGCCAGGCTAGCTGTCTGATGAGTGCAAGGTATCTTAGTTTCTTTGCTAGCAATTTTGAATATGGGTGTTATAATATCTGAAATTTTGTGTAG
Seq C2 exon
GTGAAATCTCAGGAGCTGTTTGATGAATGGGTAGCAAAGCTTCGTCATCACAGAATGTATCGTCAGAATGAAATCTCCATGTTTCCTCATGACGTCAATAATCTTTTCTTCCCAGTATCTACTACTGTGGACTCTGGCCCTGGTCTGTGTGATTTGACTCCAAGTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGAGAGGGAAACTTCATGGCT
R:
ACTTGGAGTCAAATCACACAGACC
Band lengths:
278-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]