MmuINT0113748 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96915429-96915959:+
Coord C1 exon
chr11:96915429-96915542
Coord A exon
chr11:96915543-96915863
Coord C2 exon
chr11:96915864-96915959
Length
321 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCTCTCCATCACTTCTTCAGATC
3' ss Score
9.06
Exon sequences
Seq C1 exon
ATCACCAAGGGGAAGGTCCACGGCTCCATCGATGTCCGGCTATCCGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTCGACACAGAAGACAACATTTACCACCTAAAG
Seq A exon
GTGACATTCCTGAGGTTAGAGTGTTGTGGGCACTAGCCTGGCAGAGGTGGCCAAAGAGCCAAGGGTCTTCTTAGAGTTTGACAAGAAGAAAGTTTCTTTTGTGTGAAACAGTCAGGCGCCGGCCCACTCTGATGGTTGGCTGTTAACAGATACTGAGATAAGAACGCAGACGCTTGGAATGTCATACTCTCTGTCTGCGATAGGGTTTTGTGCAAACTGGATGGTCTAGGGAAATTCCCTGCTTGCCTAGAGATAGAGACCTGATATTTTGCTCCTGGGAAGCAGCCCCTCCCTTCTTATCTCTCTCCATCACTTCTTCAG
Seq C2 exon
ATCAAATCTCAGGACCTGTTCCATAGCTGGGTGGCCCAGCTTCGAGCCCACCGCTTGGCCCAGCGCTTGGACATGCCCAGTGCCACTCATCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.344
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCAAGGGGAAGGTCCAC
R:
CTTCCGATGAGTGGCACTGG
Band lengths:
210-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: