HsaINT0118716 @ hg38
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47818506-47819099:-
Coord C1 exon
chr17:47818986-47819099
Coord A exon
chr17:47818617-47818985
Coord C2 exon
chr17:47818506-47818616
Length
369 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
CCTCTCCATCACTTCTGCAGATC
3' ss Score
9.36
Exon sequences
Seq C1 exon
ATCACCAAGGGGAAGCTCCATGGCTCCATCGATGTCCGGCTGTCGGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTTGACACTGAAGACAACATCTACCACCTCAAG
Seq A exon
GTGACATCCCTGGGAGGCAGGACGTGTGTTGGCCCCCAACCTGACAGAGGCATTGGAACACACAGGGGCAGGGGCTGAGGGTCTGTGGAACTCAGGGTCTGTCTCTGAGTTTGACAAAAAGTAAGTTTCCATCCTGTAAAAACAGCCAAGGGCAAACCTGCACTTCTTGGTTGTTGTATGGACAGGCACAGAGCTAAGGGCTCAGACACCTGGGCGCCTTGCGCTCTGTCTCCCTGCAAGTGAGCCTTGCACAAACCAGGCTCTGTAAGAAGAGACCCTGCTTGTCTGGGGACCAGAGCCCTGACTTCTTGCTCTTGGAAAGTGGTCCCTCTCTTCAGATAGCCCTCCCCCTCTCCATCACTTCTGCAG
Seq C2 exon
ATCAAATCCCAGGACCTATTCCAGAGCTGGGTGGCGCAGCTGCGTGCCCACCGCCTAGCCCACCGCCTGGACATGCCCCGTGGCTCACTGCCCAGTACTGCTCACCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025:ENST00000007414:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=45.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCAAGGGGAAGCTCCAT
R:
CTTCCGGTGAGCAGTACTGGG
Band lengths:
225-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development