HsaINT0118718 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45894622-45895752:-
Coord C1 exon
chr17:45895635-45895752
Coord A exon
chr17:45894726-45895634
Coord C2 exon
chr17:45894622-45894725
Length
909 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CTTGTTCTTTTTCCCCGCAGAGC
3' ss Score
13.24
Exon sequences
Seq C1 exon
GTTCCTGGTGCCCAGCTTCCAACAGCAGCTACTGCCTCAGCCCTACCTGGGCTTGGACCGCGGGAGAAAGTGTCTTCCTGGCTGAGGGACAGTGATGGGCTGGACCGCTGCTCTCATG
Seq A exon
GTGAGGGGCCCTAGGCGCAGCACCTCCAAGGGTAGGCCCCAAGCTGGCAGGTCTAGGAGGGGAAAATGTTACCTCCATCCCTGCCTCAGGGAGCCCCAGTTTAATGAGACAGCCTCTGCCTCCAAGGAGATCCAGTCTACCTGGGCCCTGTCTAGGGGAGTCCCAGTCTTACAGAGGAGTAAGAGTCTGCCTGGGCACATAGACAGACGTGGATGCAGGGACAGGAGTTGTGACAAAGCAGATACTGAGTGCCCACACAGGGCAGGGGCCTGAGGAGTAGCGCCAGGGAAGGGGTGTGCTCTAGGAAAGGGTTCCTGCAGTAGGGTCTGTGAAGTTGGCCTGGAGGGAGAAGTGTAAACCAAGTAGAGAGAGAGAGAGGGTGAGCACATCCCCAGTCTGCTCAAAGGCAGCAAAGGTGAGGCATGGTCTAGAGACAGAGCAGAAATTAGGCTTCAGACCCTCCCAGGAAACCAGGGGGCACCACACCAACAGGGGTAGCGACCTGAGCTCTTGAACAGGGAACAGGGAGCAGTATCGGGATCTCCATGAAGTCAGTGTTGGGAGAGTCATGTCCTTGAGGCTGGGTTCGGTGGCTCATGCCTGTAATCCCAGCACTTTTGGAAACCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGGCCAGCCTGACCAACATAGTGGAACCCCATCTCTACTAAAAATACAACAAATTAGCCAGGCATGGTGGTGCGCACCTGTAATCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCATTCCACTCTAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAAAATGAATGGTGTTCTTGTTCTTGTTCTTTTTCCCCGCAG
Seq C2 exon
AGCTCTCTGAGTGTCAGGGGAAGCTCCAGGAACTACACAGGCTCCTCCAGAGCCTGGAGTCCCTGCACCGAATCCCCTCAGCCCCTGTTATCCCCACACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCCAGCTTCCAACAG
R:
CTGGTGTGTGGGGATAACAGG
Band lengths:
216-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)