GgaINT1021178 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:406632-406999:-
Coord C1 exon
chr25:406853-406999
Coord A exon
chr25:406761-406852
Coord C2 exon
chr25:406632-406760
Length
92 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGGCAGCCCCGTGCCCGCAGAGT
3' ss Score
7.4
Exon sequences
Seq C1 exon
GGCTGCAGTGCAAGCAGAGCTGCCCGCAGGGCTCCTGGGGCCGAGGCTGCCGCCAGCTCTGCGTGTGCCGCAACGGAGCGTCGTGCTCTCCTGAGGATGGATCATGCACCTGCACCCCAGGCTTCCGTGGCCCCACCTGCCAGCGCC
Seq A exon
GTGAGTGCCCCACTGGGGGGTTCTCCCCACCCCTCAAACCCCACGGGGCTGAGGCTGGGTGCGCTCAGCTCATGGCAGCCCCGTGCCCGCAG
Seq C2 exon
AGTGCCCTCCCGGCCGCTACGGAAAGAGGTGTGCACTGAGCTGCTCCTGTGCCAATGGCTCCTCCTGCCACCACGCCACCGGTGCCTGCCTCTGTGCTGCGGGCTGGAGCGGCCCCCACTGCTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(47.8=44.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(68.2=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGCAAGCAGAGCTG
R:
GTGCACACCTCTTTCCGTAGC
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]