HsaINT0122915 @ hg38
Intron Retention
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr1:156910234-156910743:+
Coord C1 exon
chr1:156910234-156910380
Coord A exon
chr1:156910381-156910617
Coord C2 exon
chr1:156910618-156910743
Length
237 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
CATGTACCCCTTTCCCCCAGCCT
3' ss Score
7.11
Exon sequences
Seq C1 exon
GTGCCCGCTGCCACCTGTCCTGCCCTGAGGGCTTATGGGGAGTCAACTGTAGCAACACCTGCACCTGCAAGAATGGGGGCACCTGTCTCCCTGAGAATGGCAACTGCGTGTGTGCACCCGGATTCCGGGGCCCCTCCTGCCAGAGAT
Seq A exon
GTGAGGCTCCCTACTGCCCCTTCCACCTGCCACCAGCAGGGGGCAGTGTAGTGTCAGCTGCCAGAGCACCCCTCCCCCCGCGCCCGCCGCCCACCTCTCCCACCTTACCCCCGGTCTCTTCCTCTGACCCGTCTTCAGACTAGTTACTGCAGTGGGAAGGTGGGAGGGAGACGGTGGGGTAAGGGCTGATTGAGGATTGGCCTCTGCCCCCAATCACCATGTACCCCTTTCCCCCAG
Seq C2 exon
CCTGTCAGCCTGGCCGCTATGGCAAACGCTGTGTGCCCTGCAAGTGCGCTAACCACTCCTTCTGCCACCCCTCGAACGGGACCTGCTACTGCCTGGCTGGCTGGACAGGCCCCGACTGCTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800:ENST00000338302:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(65.9=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCTGTCCTGCCC
R:
GAGCAGTCGGGGCCTGTC
Band lengths:
261-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development