GgaINT1021187 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:404204-404960:-
Coord C1 exon
chr25:404766-404960
Coord A exon
chr25:404659-404765
Coord C2 exon
chr25:404204-404658
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
TCCTCCTCTGCTCCCTACAGAGA
3' ss Score
9.26
Exon sequences
Seq C1 exon
AACACCCCCAGGAGGGGCTGAGGGCCAGCGGCAGCTCTCTGGCCAGTGAGAACCCCTACGCCACCATCAAGGATGTGCCATCGCCGCTGGCCAAGGCCTCCGAGGGCAGCTACATGGAAATGAAGTCCCCGGTGCAGCGAGAGATGTCCTACGCAGAGATTGGGCTCCTGGAGGAGCCCGACGGTAACGAGGAAG
Seq A exon
GTACGCCCGGGGGATGGTGGAGGTATGAGGGGGTGGCATCGTGGTGGAGGCTCAGCCCTGCGGGCAGGAGGCTCCCATCTCCCACTGTCCTCCTCTGCTCCCTACAG
Seq C2 exon
AGAGCAGCCCGGGGGGGGCGGAGGACACAGCGGCAGCCCGGGACGTTCGCAGCCACTACGACTCGCCCAAGAACAGCCACATCCCGAGTCACTACGACGTGCCCCCCGTCCGCCACCCGCCGTCCCCCCCGCTCCGCAGGAAGGATCGCTGAGGACCCCCCCCCATACCATCACCCCTCCCCTCCCCACCCTCACATCGCGACACGTGGACGGGAAACGCCGCTCTGCAGCGGGGACACCGCGAGACGGCAGCGGGCAACCCGGGGTCCGCGCGGGACCGGACTCCCATCCCGCCCCCCCCGGCGTGGGTCCGTCCCTGTCGCCGCCGCCGTCCCGCAGCCCTCGGGGCACCGCTGTCAATAAAGCCGGGTTGGCTGTGGGAGCGGCGTCCTCAGGAGTTGTGTCCGTGGGGGGAGGGCAGCGGTGAGGGGGCGGCGATGGGCGCACAGCAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGCCACCATCAAGGATG
R:
CACGTCGTAGTGACTCGGGAT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]