HsaINT0122924 @ hg19
Intron Retention
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156883644-156886226:+
Coord C1 exon
chr1:156883644-156883892
Coord A exon
chr1:156883893-156884438
Coord C2 exon
chr1:156884439-156886226
Length
546 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TCTTGTCCTCATGTTTCCAGACC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGCTCATCTCTGAAGAGGAGCTCGGGGCCAGTGTGGCTTCCCTGAGCAGTGAGAACCCATATGCCACCATCCGGGACCTGCCCAGCTTGCCAGGGGGCCCCCGGGAGAGCAGCTACATGGAGATGAAAGGCCCTCCCTCAGGATCTCCCCCCAGGCAGCCTCCTCAGTTCTGGGACAGCCAGAGGCGGCGGCAACCCCAGCCACAGAGAGACAGTGGCACCTACGAGCAGCCCAGCCCCCTGATCCATG
Seq A exon
GTGAGCCCTCCCTCTCCACTGGCAGGAGCAGCAGAGAACTGGGACAAGGGAGGCAGAAAAACAGAAGGAACAGAGGGAGAAGAGAAGGCATGATGTGGCATCAAGAGTGAGGCCTTTGGGGTCAGCTTCGGGCTCAAATCAGGCATGACGGGGAGGCGACGTGGCCTCTCAGAGCCTGTGTCCTCATCTGGAGAACAGTATGGTGTACCTTCTTCGCAGAGCTCAGGATAGAAGTGGGGTCGTACAGCATCAGAGTGGTGGAGTTGGTACCCAGAAAAGTAGGGAGCCAGGCAGGTGATAAAGTCTCCTCATATCCTGGGAGGTGGGCGGGCTGAGGTGGCTTTCTCCATTGGCAGCTGAGAAGCTAAGAGAGTTTTGCTTGGAGCCGCACGGCCAGCTGATAGTAAACTGGTGTATGTATCCAGGCCCCATCTGCTTCTCTTTGCCTTGAAGAGGCTGAAGAGGAGAGGAGTGCAGTGGGAGTGGAGGGAGTGGGGAGAGTGGTGGGAGGAGCCACTCCCTCTTATCTTGTCCTCATGTTTCCAG
Seq C2 exon
ACCGAGACTCTGTGGGCTCCCAGCCCCCTCTGCCTCCGGGCCTACCCCCCGGCCACTATGACTCACCCAAGAACAGCCACATCCCTGGACATTATGACTTGCCTCCAGTACGGCATCCCCCATCACCTCCACTTCGACGCCAGGACCGTTGAGGAGCCAGGATGGTATGGCAGAGGCCAGCACACCTGGCTGTTGCTGCTCAAGGCTGGGGACAGAGCCTAGTGTACCCCTGCCAGGAGCAGGGAGTGGACCGGCAGGCTGTGAACATGAACAACGCTTAACAGAGCAAGTGATGGGAGCCTTGTTCCTGGGTTCTACCATGGGAGACGCTGATCAGCAGGATGCCTGGCTCCCTTTCCCAACCCACTGCTCCCAAGGCCTCCAGGGCCCTGTGTACATAAACTGGTGGGTTGGAAGTTGCTGGGTAACTCTGATTTCAGACATGCGTGTGGGGTACCTTTTCTGTGCATGCTCAGCCTGGGCTCTGTGCGTGTGTGTGTTTCTGTGATTTTAGAAGGGTACCAGGCACAGGTTCTGTCCTAGGGCACTTACCATTTAGTAGGGAGATGGAACCAACCCAATTAACTCTAGCAATAGCCTCCTAACTGGCCTCCTCCATTGATTCAGTGAACCTTCCAATGCATGGCTCATAATTTCAAAATACAGGCTGGTTAGTTACTCCCTACCTGAAAGCCTTCATAGGTGCCTCTTTGCTCTTCTGCCAGTATCAAAACTTTTGAAGGCCTTAAAGGCCCTGCTTTGCCTGGCCCATCTGTCTCTCCAGCCTCACCTTGAACTGTGTTCCTGTCACTGCACGCCAGTCACACCGGCCTCTAGGTCCTCCTGTAGGCCACTCTTCTTTCTGGCACAGGGACCTGCACACCTGGAGTGCCCTTCCTCCCCCACTCGCCTGTTCACCCCTGCTTTTCCTTTACACCTCCTCCTCAGGGAAGTGCCCACCCTCCGTACATCTTTCACAGCCCTGATTGCAGCTGTGTTCACTCACCAGGTACCTGCAGAAGGCCTACAGGGTGCCAGGCACTTCTTTAATGTGTTCTTTCTTTATGTGATTATTTGATTAATCTCTGCCTCCCCCACTAGACTGTAAGCTCCCTGAAGGCAAGAATCCTGTGCTTATGCTCAATATTAGCTCTCCCTTGGCACAGAGTAGGCACTCAACAAATGCTCCCCAAAAGGCTGAGTGGCTGACTGAATTAAGTACCAGTGACATGCAGTAACTGCTAAGATAGATGAGCCATCTGTATGCTCTGACAGTTACAGACTGAATAAGTTGGAGACTTCCCTAAAGGGTGGCATTTCCCCAGGGTAACAACGCAGAGCTCAGGTGTGGGAAGGTGCCAGGGGCAGGGGTGCAGAGGGGCTGAGGCTGAGGGGGGTGCAGAGGCTGGAGAAAGGATAACAGGAGAGAGTATACAGGCATGCCTTGATTTATTGCACTTCACAGGTAGCAGAATTTTTAAAGAAATTGAAGGTTTTGGGACATATATGTGACAGCAATAGGTTAAGAAAAGCAAAGCAGAGAAATTGAAGATTTGTGTCAACACTGCTTTAAGCAAATCTGTTGGCACCATTTTTCCAATAGCATGTGCCCATTTTGGGTCTCTACATTGCATTTTGGTAATTGCTTGCAATATTTCAAGCATTTTCATTGTTATTATATGTGTTATAGTGATCTGTGATCAGTGATCTTTGATATATTATTGTAATTGTTTCGGGGCGCCATGAACCGCACCCATATAACACGGTAAACTTAATCAGCAAACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-PEAR1:NM_001080471:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACAGTGGCACCTACGA
R:
CAGGAACAAGGCTCCCATCAC
Band lengths:
354-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)