GgaINT1021189 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:409958-410225:-
Coord C1 exon
chr25:410125-410225
Coord A exon
chr25:410051-410124
Coord C2 exon
chr25:409958-410050
Length
74 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
TTCCAGCTGTGTGCCTGCAGCGC
3' ss Score
7.56
Exon sequences
Seq C1 exon
GGTTGTGTACCGCACGGAGTACCGACAGGCGGTGCGCACCGACTACCGCCGGCGCTACCAGTGCTGCCTGGGCTACTATGAGAGCAGGGACGCCTGCGTCC
Seq A exon
GTGAGTGGGGTCGGTGGGGGGCGAGGGGGGGTCCTGGGCTGTCCACTGCTCACCTTCCAGCTGTGTGCCTGCAG
Seq C2 exon
CGCGCTGCACCCAGGAGTGCGTCCACGGGCGGTGCGTGGCCCCCGAGCGTTGCCAGTGTGAGCCGGGCTGGAGGGGACACGACTGCTCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACCGCACGGAGTACC
R:
AGTCGTGTCCCCTCCAGC
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]