MmuINT0117742 @ mm10
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87758325-87759194:-
Coord C1 exon
chr3:87759094-87759194
Coord A exon
chr3:87758418-87759093
Coord C2 exon
chr3:87758325-87758417
Length
676 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
TTCATTTTGTCTCTGGCCAGCAC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTAGGGGTTACTACGAGAGCAGAGGGGCCTGTGTCC
Seq A exon
GTGAGTCCTGAGTTGGGCCGGGGGAGGAATGGAATGGGAGGGGCCCAGCCATCTGAATTTTCCCCTGTCCTAGTGAGGGGTGCCGTGGTGGGGTGCTACTGTCTGCTCCTTCAGTTCCCCTTTGGCCAGTAACTGTAGCTGGGGTTGGGGTGACAGGGCTGGCAATGGAGGCTGGGCTCGCTATCAGTCTCTTGTTCCCTAGCATACTGTGAGCCTATCTTCAGATGTATCCCTGCTTGTCCTCTGGCCTTCCATTCCACGGCTCTGACTAGTCACCAGTGCCCACAGGCTCAGCTTCCCAGCCTGACACAACCCTTCCCTCGGCCCCTCCCCTCCTCTTGGTCCCTCCCCTCCCCTCGACCCCTCCCCTCCCCTCAGCCACTCCCCTCCACTCAGCCCCTCCCCTTTCTGACCATATTGCTATCATTTGAGAATCCACCCCCCACCTCCATTTCCCGACAAGATGTTTAGAAATGTTCACAGAGAGGGTTCAGGCAGTCTGGAGCCCTGGGGTCCTACCCAGTCTAACCCTGAGTTGCTCCCCAAGTCTTCATCTCAGACAGAGCTGATGTTGGGGAGCTACAGGACCCGGTATGGGAGGGAATGGCTCTGGCTTCACAGATTAAATTGGGAAGGTAGGTGGAGGTATTTTCTCATTCATTTTGTCTCTGGCCAG
Seq C2 exon
CACTCTGTGCCCAGGAGTGTGTCCATGGTCGCTGTGTGGCTCCGAATCAGTGCCAGTGTGCACCAGGCTGGCGGGGTGGCGACTGCTCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073:ENSMUST00000172621:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.2=82.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCTACCGGACTGTGTACC
R:
CTGGAGCAGTCGCCACCC
Band lengths:
191-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types