GgaINT1021405 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8291314-8291636:-
Coord C1 exon
chr17:8291536-8291636
Coord A exon
chr17:8291463-8291535
Coord C2 exon
chr17:8291314-8291462
Length
73 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CGTCCCGCTGCCTCCCGCAGAAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTTACCATCAGCAGTGCCATGTCCCGGTGGCGAGCAGTGATGAGGGCCCGTTGGGGACGCCGTGGTTCTGCCGCCGCTGCATCTTCGCCCTGGCCGTGCGG
Seq A exon
GTGAGTGGGGCTGCGGGGCGCTGCGCTGCGGGGTGCGGCCTCAGTGCTGACCCCGTCCCGCTGCCTCCCGCAG
Seq C2 exon
AAAGGGGGTGCCCTGAAGAAGGGAGCCATTGCCAAGACACTGCAAGCCGTCAAGATGGTGCTGTCCTACAACCCCGACCTGCTGGAGTGGGACTCTCCGCACCGCACCAACCAACAGCAGTGCTACTGCTACTGCGGGGGCCCTGGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(30.0=44.1),PF144461=Prok-RING_1=PD(29.3=35.3),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCAGCAGTGCCATGTC
R:
GGGTTGTAGGACAGCACCATC
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]