HsaINT1026792 @ hg38
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120869182-120869945:-
Coord C1 exon
chr9:120869845-120869945
Coord A exon
chr9:120869331-120869844
Coord C2 exon
chr9:120869182-120869330
Length
514 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GGGCCCTCGTCTCCCCCCAGAAA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCTGACCAGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCACTGGCTGTGCGG
Seq A exon
GTGAGCCTTCCATCCTCCCCAGTCCCTGCCTCTCCTGCCTCCTCCAGTGGGGCAGACCAGAGACTCCCATCACAGAGTCTGAGCTCCAAGCAGAAGGGCCACACCTGGGCTTTGGAGACAGATAGCGCCTCTGCCACTGTCCTTGGCCAGGATTTGTAGACTCCCTGAGCCTCAGTTTCCTCAACTGTAAAGTGGAGATGGGTTTGGTGTCGGGAATAACGGGACCAATAAATGATGCTTTACTATTAAAAAAGAAAATCCATGTAAATACATGTTGGTAATTGTTGCCTTTATTGCGCTTATTACTCTTAATTCTGTTATCAACGGAGTTCCTTCTGGGATAGAGGGGATGGGTTTGGAATTAATGAGAAAAAGCTCCTTGCTTTTCTGACTATATTGGAATATCTGCGGGTCCCCCAAGCCCTGGCAGCACTTCCCTCAATAGACAGCCGCGTGCTGACTCGCGTGGTCCACCCGGACCTGGTGGTTGACTGGGGCCCTCGTCTCCCCCCAG
Seq C2 exon
AAAGGCGGCGCGCTGAAGAAGGGCGCCATCGCCAGGACGCTGCAGGCCGTGAAGATGGTGCTGTCCTACCAGCCCGAGGAGCTCGAGTGGGACTCGCCCCATCGCACCAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCCGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403:ENST00000373896:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PD(31.0=38.2),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCACCAGCAGTGCCACAT
R:
GCCGCAGTAGCAGTAGCATTG
Band lengths:
238-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains