GgaINT1021570 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11160139-11160482:-
Coord C1 exon
chr5:11160440-11160482
Coord A exon
chr5:11160353-11160439
Coord C2 exon
chr5:11160139-11160352
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AAAAATCACTTACAATTTAGGCT
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTATCCCTGAAATGTGGCGATGATGCTAGCAAGAGCTCATCTG
Seq A exon
GTGAGTAGAGTTCTTCAGTTTTATTAAAAGTGGCTTCAATGTGGCTATTTTAAGGAAGATATGCATTAAAAATCACTTACAATTTAG
Seq C2 exon
GCTCACTGCAGCCTGAAAGTCCTCTGAAAGTGAGTATAGACCTGTTGACAAGAGCAGTTGAGGCCCTTGTGCGACTCCACATGAATTCATGTAGCATGAGTTCTGCAACAGTTTCTCCAGAAGATAAGACTACCAAGGAAGCATGGACTGCCACAGAACATCTCCAGTTCACAATATTTGCTGCACATGGAATTTTTCCTGATTGGGTATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCGATGATGCTAGCAAG
R:
CAGTCCATGCTTCCTTGGTAGT
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]