GgaINT1021585 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11146966-11147953:-
Coord C1 exon
chr5:11147784-11147953
Coord A exon
chr5:11147123-11147783
Coord C2 exon
chr5:11146966-11147122
Length
661 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTATGTGCTTTTATGAACAGGGA
3' ss Score
8.3
Exon sequences
Seq C1 exon
GCTTCAGAAAACTTCATTTATTCTTGTGCAGGATGCTGTGTCGCTACTTATGTCCTGGGAATTTGTGACCGCCACAACGATAACATAATGCTTCGAAACACAGGGCATATGTTTCACATTGACTTTGGAAAGTTTCTGGGTCACGCGCAAATGTTTGGTAGCTTTAAAAG
Seq A exon
GTATTTTCCATTGCTAAGCAGAGAATGAAGTGATTTTTTTTGTATATTCTAATAAGCATTAACATTTAAATTCCTGTGACATGCAGTTTTTAGTATGAAGCTAATATCTTCCAATCTAATCACTGAGTTTGCAGAATGCCCTCAAACTTGCTTGTACAGAAGTAATTCTGAGAAGTTTCCAGTTTTCCATTTTCATAATCTGATCTCTAGAATTTTTTTTTTTAAGTCTAAGCACCTAGGCATAGCTTTCAAATAAAGTTACTGTCCTAGCTTCTGGTAGGTTGAAATAAGGATCAATATTTAACACACTTTTCAAAACTGCATTAATTCTTTAAGAATTTCTGTGCTGAATATGCTTAAATCTCAGTGGGGATTTTCTCGAAGCGCTTACAAAAGCCAGACATCTTGTGTTTGTGTGTTGTGGCTTCTAGAAATGAGGGATGAAAGGCACCGTAATTTAACCTGGCCTCCAAGTGTTGCTCCAGGAGATTCTGAAGTAGGTCCATGGGAATGTGCAGGAAACCTGAGTAGCTGAACCCAACCTAGAAAAGTAAAGTGGTATTAATGGGTATCAATACCTGGGGGTGGGAATGGAGGGAAGCATGTGACAAAGTGAATAGACCTTGTAAGTAACATATGAATTATGTGCTTTTATGAACAG
Seq C2 exon
GGATCGGGCTCCATTTGTGCTAACATCTGACATGGCTTATGTCATTAATGGTGGTGAAAAACCCACTATTCGCTTTCAGTTGTTTGTGGATCTCTGTTGTCAAGCTTACAATTTGATAAGGAAACATGCAAACCTCTTCCTTAACCTACTTTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCATTTATTCTTGTGCAGGA
R:
CAGGGAAAGTAGGTTAAGGAAGAGG
Band lengths:
318-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]