GgaINT1021596 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11166340-11169562:-
Coord C1 exon
chr5:11169405-11169562
Coord A exon
chr5:11166461-11169404
Coord C2 exon
chr5:11166340-11166460
Length
2944 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
GATGTCATTTCTTTAAACAGTGA
3' ss Score
7.17
Exon sequences
Seq C1 exon
ATTGAGGACCAAGTTTCCTTACACTGATCAGCAATCAAACCCAGGCTTTGTGCTGAGTCCAATCATGCTACAAAGAAATATAACTGGGGAGAGTGCCAGTATCAAGGTTTCTATAGAAATCAAGGGATTCCAGCAGCCAGTAACTTTTACATGTGATG
Seq A exon
GTATGTTTCTACTTTTTAAACTGGAATTTGCTTGTAAGGCTTAGAGTGGTGGATTGAGACTGCATACTTGGTCTAGGCCAGTGGCTTTTTAAGGTCTTGTAATCCCTGGGTTTCAGTTACAGGGATTGCTTGCGGGGAATGTGGGAAAGGTAGCTGAAGAAAGAACCTAGATGTGGGTCACTAACTCCATCAGAAAATATTTAGAAGCTGACAAATTGGAACAGTTTTCAACAAAATAAACCATACAAACCGGAAGCACTGTTCTATCCACAGCTGGGAATGTTAATACAACTTTTTAAGAGTTTGACCTACTTTATGGTAATCTGGGAGAGAAGGGAGGGGAAACAGATTCTGAACTTTCATCAATTTTTTATTCAAACGTTTGCTAGAATACTTAAAGCTATTTCAGATAACCTGAAAATTCAGACAAATTGCTGTTGGGAAATAAGAGTAAATGCTGAAATTATTCTAGCTATCATGAGATCAGTGTATGCTTGTCTACGTGTATAAAAATGATGCTGTCTTGCTGTACTTCAACTAGCTGGCCCAGTTTATGGATAATGAAGCATATTAGTTTGGGGTGGAATTCAGAGGCTTGCCTTGTCCTTGGATATAAATTCATATTCTCTGCGCAGTCAGCACTGCACAGCCTGTCTGTATTAAGGCTGTAACTTCGGATGCCATCAACTTATGTCTGTTCTTGGTGATTAAAAAGCTGCTGCTGATAATAAATTACCTCAGGAACAGCTTACAGCTTAGTCTGTACATTGCTGTAATCTCTTAGGCCTGGTGAGAGTTCCCATTCCCAGGCCAGGTCACCTGGCAGTAGGCCTGTGCTGCAGCGCTTCTTATCATTCACTTCTCTCTGGAAGCGTAGACCCCTCAGAACTGGACGTTCTCAAAAGATATGAAATTGTTCTACTCTTCCCTTGACCTAGAAGCTCTACTGGAAAACAAGCTCCTAATGCATAAATATTTTCATTTAATATTAATCTGCTGAACCTTGCAGTTATTCTGCTTCGATTTAATACTCCTCTGTTAAGCGTAGCCTAGGAAGGGCTCATGCTGTTTATTGTAAGTTTGCACTTCACTAATATTCCAGGCTTAATTCTTTCCTACAGAAGGTTTTAGTAATGTAAAGAGGTGTTATAGCTTTGGCCCTTTGTTTCTAGAAGTTCAGTGAAACCTTGGAATGTGGTTTGTTTCTAGCCCCACACGCCTCGTTCTTTGTACTGTCTGCTCACATCCTTTTTTCTCATGCTGAGACTTCACCATTAAACTTTGAATCTTTCATCCCTAGCATCTGTAGACATCTATATAGCATATACTGTGACTAGACATAGGTGTGTTTAAAGCTGCCTTCTTCCTTTAAGTCCATCTTTTCTTGGTAAATTCTTGCATATTTTAGCTTCCTAATGCTGGAGCAGCTTCCTTATGGCTTTCAGTCCTGCTCAGATGGAACTGTAGCTTTTCAGTGTTCTTATGACTCAGTGCGTAGAGGGAGGGAAACAGGTCAACTTCAGAGTTCATTTGGGTATACCTTTTGGTACTGGTTATTAGACTTTACAGGGAAGCACAAGTCTACTTGAGCAGTCACATATCAGGAAGAAATGAGCCCCTTTCAATAAGATAGAGGTGGTAAAAAGGTGGTAACGTCTTCATGTTAGTTTGTAATGCTCCACAAGACTGACAGACCTTAAGCAACGGAGCCTATGACTACAGCACGTAAGCTGTAAGCTGTTACTGTACCTTTTTATTCCATCATCCACCATATTTTCTGCTGAAGTCAGTCTTTCTGAGTTCGTACTTACTGTTACTTGTTGTCAAGCTATACTCATTCTTCATGGGCCACCCAATACCACTGTGCTTATAATAAGTCATCTGTTAATGAGATGAAGCACTTGCATTCTTATGGAAAATATTGTTTGGATTTACCTGCATATCCATCATAGTAGTAGCATCCCTTATATTAAGGGTAAGAAAATTAAGAAGAAGAGGTCAATGGAAAGATTAGGTCAATGGAAAAAAAAGAGAACTGAGGGTACTGCTGAAAAAAATGAATGCTTCTGCATAGTGTTTGCTGATGAACTTCGAGGAACTTTGACATCATTGGCAGATGATTCAAAGGCAATCAGAAAGTAGGTAGGGAGGCATAAGGAATGCTTTTTAAATAAACTTTCTGTGTTAAAACGTATCTGTCTTTTCTTCCCGCAGTGACAGCTGGTGCCTGTAGGAGAGTGAGTGTGAGGCTTGACTGGGGTTATTTCTGTTGCTGTGTGTTTGATGGTTAGAAAGGAAAATCTACTTTCAAAACATTGGATACCTGATAAAAAAAAGCTTTGGTAGTTAAGAATTGTGTTTTGCAAAAGCTTGATGATGCTTACTAAGATCTGATCTACACAATGTGAAAGCTGCTCTAGATAAATAAAAAGGGAAAAGATTTCCAGTACCATTTCTCTCTGCTACAGCTGGCTTTAATTTCCTTAAAAGCAGTACAAATACAGAAGTTCTATAATCAACTTTTAAGATAATGGTTTTTTTAAACTTCAGAGTGCTCTAGAGTCGTTTAATCATTTGTCACCTTTCCTGCTTAAGACAATCTTATTAGAAAATAAATTAAAATGCTTTTCTTGTGTAAAAACTCCTGCAAAATATATTGTGAGTTAAGTGGTTTTGTACTTCTTGTCAAGTGGCTGCACCGTACCCTAATTTAAATAGGAGTTGTTCCTTCTGAAACTACAGGCAGGTTTTATAGCATGCCTTTCTTTGCAGCATAAAGAGAAGATGTGAAATTATGAAATTTGAGAGTCGATAGAGGCATAAAAATCTTCTCTACAAGTATAAAACCATAATTCAAGAACAAGTACAACTTGTTAGTGAAATATGTTTAGTATCATTTGCAGTACACCCATATTTAACTTCTAGATGTCATTTCTTTAAACAG
Seq C2 exon
TGAGCTCTCCCGTTGAGCTTATAATAATGCAGGCGCTTTGCTGGGTGCATGATGACTTGAATGAAGTGGATATTGGCAGCTATTTCCTGAAAGTCTGTGGCCAAGAAGAAGTTCTACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.7=63.0)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]