RnoINT0111257 @ rn6
Intron Retention
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185261106-185264034:+
Coord C1 exon
chr1:185261106-185261263
Coord A exon
chr1:185261264-185263913
Coord C2 exon
chr1:185263914-185264034
Length
2650 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GACAAGTAACTCTTTTTCAGTGA
3' ss Score
3.78
Exon sequences
Seq C1 exon
ATTAAAGACCAAATTTCCATATACCGATCACTGTACAAATCCAGGCTATTTGTTAAGTCCAGTCACAGTGCAAAGAAACATGTGTGGGGAAAATGCCAGTGTGAAGGTCTCCATTGAAATTGAAGGGTTTCAACAACCAGTTACTTTTACATGTGATG
Seq A exon
GTAAGTTTTGTGTTGACTAGGAATAAAATGTTTTCAATGCCAATATATCCTTTCTTCTCATAAAACAATTTTTTTTTTCCGGAGCTGGGGACTGAACCCAGGGCCTAGTGCTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCTCCAACAATTTTTTTTTTTTTTTAATCATTAGGTATCCTTTTAAAATGTCTGCATTCTCTTGGGAAGTTTTCTGGTTAAGGGAACAAGGTCACTGCAGGACTTTTCTCTGAATATAATAAATTGGTTTTTAGCTAAGGCCCCAAAGCATTAGCTATCAAGGCTAATTATAATGTTTTCTTCTACTTTTATGGCAAGAAAAGTACTTTCTTACAGAGAGCTGTCAGTGATACGAACCTTCAGATCACTTCTGATCTCCTCTGCAGGGAAGGTTCCCTTTGGTGTTAATTTTTCCTTCCAAGCTTGGGTAAACATTCTTTCTAGAATTGTGTCCTGGATATGTTTATAGTGTGTTTTATTTAAGTGAGATTTGAATGGTGAGGTAAGTTTCCTATTCCTAAAGTAGTAACTTCATGTAAGACTGAAGCCTTTCAGGGCTGGAGACATGGTTCATTTGGTTAAGAGTACTGGCTGCTCTTCTAGAGGTCCTGAGTTTAATTCCCAGCAACCACATGATGGCTCACAGCTATCTGTGTTTGGATCTGATGTCTTCTTCTGATATGTCTGAAGACGGCTCTGTGAGTTTGGCACCAGCCTGATATATAGAGCTAGTTCTAGGACAGCCAGGGCTATTCAGAGAAACCCTGTCCTGGGGGGCAGTAGGATAAAAGTTAAACATGAAAGTTTTAAGTATAGAAAAAAGTTGAGCATAAAAGTTTTAAGTATAAAAATAGATAATTTTAAAAACTTTAATTTGGGTCTGCAGAGTTAGCTTAGTGATTAAGAGCACTTGTTGCTCTTACCGAGGACCTATGTTAAGTTCCAGCATCCACATGGCTGCTCACTGTCTAACAAAGCTAATGGAGGCTTTGGAGCCCTTGAACTGTAGCTTCAACTCTAGTCCCACCTCATATGACACTCTCTTTTGACCTCTCTTGGCGTCTGGCATGCACACAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTATATATATATATATATATATACACATTTAAAAGTAATCTAAGAAAAATTGAAAACTAATTTTCTTATTGTTGTCATTAGTTCATGTTAGCAAGAGTAAGACTGCCTACTTGCTCTGTTTCTTCTTCTTCATTGGAAAATTTACTATACAAATATTTAGTACTTTTTTCTTTATCATTTGCTTTAAGACACTGCTTGCTAGGTACTGCTGACTACTGCCCTATTTGAAGGAACTGTAATATTGTTGTGACTTACATAGACCTTTCATAGAGATTGTAGAGCCCTTAAAATGTGGCTCATGTAGATGGTACATTCTGTAGATCCAAAATATACACTTGAATTCAGAGCCTTAGTCTAAAAAAAATATAAATGAAAATGTAAAATAGTTCAGTAGTTTAAAAAATACTGATAATGCTAAAAATCATATATTTACACAATTTATTGTTTGTTTAAGATAGGGTCTCATTATGTAGCCCAGGCTGGCCTAAACTCATGATACTCCTGCCTCTAAACTAATGTTCTTAATCAGACTAAGGGTCTGGAGAGATGGCTTGATAGTTAAGAGCACCGACTGCTCTTTCAGAGGTCCTGAGCTCAATTCCCAGTAACCACATGGTGGCTCACAACCATCTGAATGGGATCCGATGCCCTCTTCTGGTATGTTTGAAGACAGCTACAGTGTACTCATATACATTAAATAAATAAATCTTTATATTAGACTAAATAAAACATTATTAAAATTAGTTTTATAAGGCTGGAGATATAGATTAGTTGGTAGAGTGCTTGTCTAGCATCCATGAGATACGTTTTATTGATCCTCAGCACCACATAAACTAGGCATAATGGTACATACCTGTAATCCCAACACTTAGGATGCAGAAAAGGTATCACAAGTTCAAAATCATTCTCTGCTTTATAGTGAATTCTGGGCCAGCCTGGGCTACATCAAAACTTGTCCCCTCCCCACCTCCAACATATACACACACAGTCTTTGCCCTATTGCTCACTTCTCAAGTTAGCCTCTTTCTCTGTTTTCATAGCTATTAGAAAATTTTAAATGGTTGAGTGTGATGGGCCAAGGGGTAGAAACAGATGGATCTGTCTTTTTTGTTTTTTTAAATGTGTACGAGTGTTTCATTTTGCATGCCTTGTGACCGTGGAGGCCAGAAGAGGGTATTGAATCCCTTGGAACTAGAGTTATAGATGGTTGTAAAATGTCATATGGTGCTGGGATTTGAGCAGCCAGTACTTTTAACTTGCTGAGCCATCTCTCAGCCCTCCAATGAGTTTGAAGCCAGTGTGAGCTACATAGTGAGTTCCAGGCCAACCAGGGCCACATAGTGAGACCCTGTCTCCAAGAAAGAAAATTTAAAGTAATACATGTGGCCTACAATTTGCATTATATCTCTGTTGTACAGTCGTCTCTTAGATTTTAAGTAATTCTTAGAGGTAAGTGAACAAAATGAAAATGACAAGTAACTCTTTTTCAG
Seq C2 exon
TGAGTTCTACTGTAGACATAATTATAATGCAAGCCCTTTGCTGGGTACATGATGACTTGAATCAAGTGGATGTTGGCAGCTACATTCTGAAAGTTTGTGGTCAAGAGGAGGTTCTACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479:ENSRNOT00000055120:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.7=63.0)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]