GgaINT1021597 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11165604-11166460:-
Coord C1 exon
chr5:11166340-11166460
Coord A exon
chr5:11165716-11166339
Coord C2 exon
chr5:11165604-11165715
Length
624 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
ATCTTTCATTTGTTCAACAGTAA
3' ss Score
6.45
Exon sequences
Seq C1 exon
TGAGCTCTCCCGTTGAGCTTATAATAATGCAGGCGCTTTGCTGGGTGCATGATGACTTGAATGAAGTGGATATTGGCAGCTATTTCCTGAAAGTCTGTGGCCAAGAAGAAGTTCTACAGAA
Seq A exon
GTAAGCAAACTCTTTTTCATTTATGTTTAACTTGGTACTTTCTAATGGCACCGTTACTGGCAAATGTGTTTTTAATGATTAAATGTGTGAAAGTAGAAATCTTCAAAATGTAGATGCACGTTTTGCACAGAGATCGGAAGTCTTTAGAGCTCCTGTGGGATACAGCAGATTCTCAGCAGCTTCCCAGAAATGTTCTAAACCGCTGTCTGTTGTGTGGAATACAATGTTTTCTGATGCAGACTTCTAAAGCATTTCTGTAGATGGATCATTTTGTTTTCAGGTCCTTTAAACGCCAATAACCAGGAAAGAATCTACTGATAACTTCTAATAATCTGATTTTTTTTCAAAGTGAATGACTGGCAAATCCCTATTCGTTTTCTGGGTTAGAATGTTTGGTTTCAATGTTAACCATAGTAGTTAAGAACTTTAGCAAAAACGTTGGTATAGCAGTATACTAAAACTTCCACTGAAGTAAAAACCCAATTGAGCAGTATGATGGCGGAGTCTGATTTACCACTTCCTTATTTTGAGCTCAGTAGATTGCTTTAAATATTTTGTGTGAGTTCTCTGAAAAGCACTGAATATTTTTGGTGTAAATAACTATATCTTTCATTTGTTCAACAG
Seq C2 exon
TAAGCACTGCGTAGGAAGCCATGAATATATTCAGAACTGTCGGAAATGGGATACAGAAATTAAACTGCAGCTTGTGACCCATACTGAAATTTGCCGAGGTCTGGCGCGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(38.5=100)
A:
NA
C2:
PF0079413=PI3K_rbd=PD(27.9=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCGTTGAGCTTATAATAATGC
R:
GCCAGACCTCGGCAAATTTCA
Band lengths:
222-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]