GgaINT1021609 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1741786-1742479:-
Coord C1 exon
chr26:1742416-1742479
Coord A exon
chr26:1741933-1742415
Coord C2 exon
chr26:1741786-1741932
Length
483 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGCCTCCCTCTGCCCCACAGGGA
3' ss Score
8.87
Exon sequences
Seq C1 exon
ACAGGCTCTGAGTCTCCTCTTTGACACCTTCCACAACGAGGTGGATACATTCCTGGCAGCTGAG
Seq A exon
GTGAGTGCTTTTGGGGGCGCAGCCTCTCCTCCTGGGGGAGCCATCCCTCTGAGCATTGCTCAGTGCTCCTGCACGGATCCTCCCCATCCCACCCCATCCCAGGGGGCTGCCACACACCCAGGAGGACAGCATTGCCACAAAAGAGTGGGTTCCCATTTTCCCCTGGACGCCAGCAGCATTTACTGTGGACTTTTCCCCCTTGTGATGGGGCTCTAAGGGTGCTTCAGGGAAGGGCAGAGGCTGGGAAATGAGGGGAAACTGAGGCACGGGCTGATGCACTCACTATATGTGGTATGTAGCAGGCTGGGGAGCTGCTATGAAGACCGAGGGCAACATTTATTCCTCTCCTCAGTATTTACTTATGCACAGCAGGGTGCAGATGTTGCTCCCTGCCCCGTGCCCTGTTGCTGCAGCCTCCCCAAAGGACCCGGGCTCTGCTTTGCCCTGCCTCTGGGCTCTGCTCAGCCTCCCTCTGCCCCACAG
Seq C2 exon
GGAGACTTCCCACTGAAGGCAGAGCGGGTGATCCAGTCGGTCATGGCCATCTGCAACGCCTTGGCTGCCGTTGAGTCGCAAGAAATCACAACAGCCCTCAACCAGATGCCCCCCTGCCCCTCCCGCATGCAGCCCAAAATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.245
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTCTGAGTCTCCTCTT
R:
TCTGGATTTTGGGCTGCATGC
Band lengths:
209-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]