MmuINT0119732 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134972388-134974049:+
Coord C1 exon
chr1:134972388-134972451
Coord A exon
chr1:134972452-134973902
Coord C2 exon
chr1:134973903-134974049
Length
1451 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TACTGTATGGCCTCCCACAGGGG
3' ss Score
6.4
Exon sequences
Seq C1 exon
GCAGGCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGACGCCTTCCTGCTGGCTGAT
Seq A exon
GTGAGTATCCACCCTGGGACTGATCAGAGAGGAACTATTGGAAGTTCCTTCCTTGCCTGCAAATGGCAGGCTGTCAGTGACACCTCTTTTCACTCCTGGCTCCGGGCAAGCAAAAAAAAACAAAAAACAAAAAAAAAAAAAAACCAAACATCTGGCTGTGGGGCAGCTGGCAAGTGTGTGAGAAGGTGCTCTGTCTTTCTGTGAAAGTCAAAAGGTGGGCTCTGATCCTGTCTCTGAAGTAGAGCATCTCCAAGCTAAGGGTTGTGGCCCAGGCTTTTCTTTTTTCCTGTCCAAAGTGCATGGGAACGCTGTGTTAAGATGTTCTGTTGAGCCTGTGACATAGATAACACACCCTCAGGAAAGTGACAACTAGATCCTTTTCCTCCTGGCCTTACATGGAAGTGTCAACCTTGGAGCCATTTCCCCAAATACCTTGAAGCTAAAGCAGTGCTCTTTGGAAGTAGTCTTCAAAATTCAAAACCCTGGGCAGGCATGGCTTCGCGCAGCTTTAATCTCAGCACTTGGGAGGCAGAAGCAGGCAAGACCTCTCTGAGTTCAAGGTCTACCCATTGAGTTCTAGGCTAGCGAGAGCTATATAGTGAGACCCTGTCTCAAATAAAACAAAGCAAAACAAAACCAACCAAACAAACAAAAAACCAAGCAAAATAACCATCCCCGTCCTCCACAGATCAAGTTTCAGTTATAGCTTCTTTCCTCTGGGGCGGTCTGTCTCGTTCACCTTTCACACACTACTAGAATCTATTTTGTAGTAGCTTCTACAACAGCATGGTCACTGACCACTTTGCAGTGTTCTGTGCTAGTTTGGAGGCTGGGTAGAGGCGAGCGAGGTAGGTGCACAGCCCAAGACTGCTTTAGCCTCAGGGAGCTTGTGCAGTCAGGAAAACGGAGTGTTCATCAAAAGCTATTAGATACAAGAGGATGGCCACGGGGGTCGGGATGGGGGAGGGCTTGTGAAGGAGTAGGTGTCCTCATCCCTAATCTGGATTGACACAAGTAGTCACAGTCAGAGGAAGAGATTTCTGATGAGAAAGCACCGGGAGCCAAAGTGTGGAGGGCAGTGGGGAGTGCAGTGTGTCTGTGGCCGCGACAGCTTGGACATTCTATAGTGAGTTATGAGAAGTCTGGACAAGCAAGTGGGGGCCTCACTGTGTTTCTCTCGCCTCATTGCTGTTTCCTGCCAATTGATTGCCTAACACTTTAGGCCTCTGGCAGAGACCTGTGTATACACAGAGATAAACTTCGCTGCAGACTGGGAATAAAAGGTTCCGGGCTGTGGCCGACAGACTGGGGAGTATGCCTGTGGCCCACTCAGAGCAAATAAAGCGTGGTTCCTGCAATTCCTCCTTAGAGTCATTAACACAGTCTTGAGACCTGGGCTGGTGGGGAGGCAGAGAGCTGAATCACTTGCCTTACTGTATGGCCTCCCACAG
Seq C2 exon
GGGGATTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCTGTCAAGGCCATTTGCAATGCTCTGGCTGCTGTGGAGACTCCCGAGATCACGAGCGCTCTCAACCAGCTGCCTCCCTGCCCCTCGCGCATGCAGCCAAAAATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCTTGAGTCTTCTGTT
R:
CTGGATTTTTGGCTGCATGCG
Band lengths:
208-1659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: