GgaINT1021878 @ galGal4
Intron Retention
Gene
ENSGALG00000016721 | PLCXD1
Description
PI-PLC X domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001122109]
Coordinates
chr1:129439291-129442045:-
Coord C1 exon
chr1:129442019-129442045
Coord A exon
chr1:129439433-129442018
Coord C2 exon
chr1:129439291-129439432
Length
2586 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTCTTTTTTTTCCCTCCCAGGAC
3' ss Score
11.9
Exon sequences
Seq C1 exon
TGGAGGCGAGGCGGCTGCTCCGGGTGG
Seq A exon
GTAAGGCGGGAGCGGAGAAGGAGGGGGAGTCTGGACGCTCGCGGTGAGATGGCAGGGTGCAAGCAGAGGGTGCTGTAACGCCGTGCGGTGTTTTTTTGGTTTTGTTTTCCTCCTTTCCACCTGAGAATTCGGTCCTCGTCGTTGCAGTCAGTGTAATTCACATTAAAATCTCTCGTGTAATTACCGGGATGTCGGTTTGCTCCCGCTTAGGCTGCAGCCAATACTTTAATTATGTCATCCGACATTCGCCAATCTCGTTCTCCTGACGGCTTCTTGCAGCGTTTGGCCGTCGGGCCCCTGGCACACCCGGCTCCTCTGCCGTGCTGGGGGCATCCCGGGGCGATGCCACCCGAAGCTCTTGGCGTCCCGGGGCTCGGGCTGGTGCTCTTGGCGTATTTCAGCCTTACTGCTTGTTTGTCGCCTGTGTCCCGGCAGAATCCTCGCGTTGTAATTAAGCTCCGTAGCACGATTAGGTTAGAAAGCGGGCAGGAGCTCATGGGGATTGATGGTGGTTCGTCGTGGCAGCAGCGTGCGGAGGATGGCTTTGCTATCAGGTTCTTGGGTGGGGAGGTGGGAATGAAGGCATTGCTCTCCTTTGAGGAGTTTGAGATTTCCTTGTGAACAGCGATAGCTAGCAGTTGCAGTTTCATTCTTCCAGGCAAGCCTTGATTTCACCCCAAAGGACGTGCTGCATCCTAACCATGAGGTGGCAGATGAGTTAGGAGGTAGTGGCGTGAGCATCTCAGGCTTGTGCTCTGCAGGAGCACAGCCCAAACCCGGTTTGATCTCTTTTGTTCAGCTCGGTCTTGCTGTTTCTGCTCCCCACTGGCTTCCCCATGCCCAAGAGAGTGCTCTTGTTGTCCCACCATGGTCAGAGTAGCAGCAGCAGCCCGTGCCAGCTGGAGGACACTGGTCAGCCTCCATAGGGATCAAACATGGCAGAAAACCAACCTTTTTCAGCAGGGATAAGCGCTGATTTCTAGCCTCTAGCAAGGTGATTTGTTGAAAGGTTAGTGGAAAACCAAGGCTAGATGAGCCAAAGGGAAAAATCCCAGGTTCCATGTAGGACACTTGGGTGATGTCACTGGGCTTTTCCCTCAGTCGTTGTGATCTTGTCTGTATCTCAGCTGGGCTGCAGTAACTTGGTTGGACTGATCCAAAGCCACATCAACTGTGCAGCCGGGCTGGCTGGGTGAGTGGTGCTACATGCATCATCAGATGTAAAAGCAGATCGTATCTGTTATATGTGATGTGTACATGGGACTTAGTAAAGCAATTGCTGACATTACCTTCCAGATGACCTCATGTGGCTGCCAAAAAATGTATTGCACAATGTTTAAGGAAACCACGGGTTCTTTATATAAACAGCATCACTCACTTGTAAATCCTGAAGAACCAACCACCTCCCCAGACAACCCAACGAATTGCTGGGGAGAAGCAGTCTCAGGAATGAATATGCATAGATGTGACAAGAAGGAACAAAAATAAGTCAGGAAGCCTGGCAAGCACAAAAGCTGCACGGTACTTATCTGATTGCTGTACCTGCAGCAGAAAAGAAGGAAATGTTCACGGTGCTAACATTTTAAGAAAGAAGGAAAAAAGAAGGTGGGATATCATCACAGGTAGTCACTGTGCCATGATCTAAAAAGTGTTCCACTACCTAGGTGGGTAAGAAAAAGCCTTGAAATCAGTGAAACAAAGGAAAGCTTTTATCTTCACAAACATCACCTGAACTTTAGGCAACAGCTTACAAAGAAAAGAAGAAATGCCATAGGGTGCTTGTCTTCATGTTTTGCACTATTCAGGAGAACACAAAGTGACATTAACTCTAGTACTCTCAAGTGAGGGGTTACTATGATTTTTCAGCTGGGGTTCATCTGCTGGCACTCCTGACCATTGCAAACTTTGCAGAAGATCCTGGAGAGATCTGTGTTCAAGAAGAACAGTTCCAGAATATCCTTCTGGAAGGTCCGACCAGCTGAAGTACTTGTAATCATGGGCTCCATAGGGATGATAAGAGCAGATGTCAAGAGATCTTCTCAAAACGGAGAATAAGAAGATGGAGGGTTTCCCCTTTGACTCCAAAAGTCATCCTGATGTGAAAATCCATTGTGCAATAGAAGAAATTAGGACTTGTCACAAAGGCATTGATAGGGCAGCTCGTGTGATGCTTTGTGACTCCCAGGGGCCTGTGGGCAGCCTGTCCCTCTCCTGTTTCTGTCAAAGATTCAGGAGGTAGACATTTTTTCCTACTGGAAATGGGCTGCCCCTCATGATGTTGTAGTAGCCTGCGTAGATAATCATTTTTCCACACCAACAGAGCCTCGTTTACTTTGGCTTCATTCTTCTTTCAGTTGGTTGGTTTGCGAGTTTGAAGCAAGAACGTACTTTGGTGTCACACTGGGAGACAGTGTTGTCTAAAGTAGTGAGTTTTGAGACTGCATAGCTCATGACCTTTTGCTGAGAGAAAGCTTGTCATTTCATAGCATGAATAAATACATTCTGCACAGGTCCAATGGCATTGTGAAATAATTTAGTGACTCTTATTCTTTTTTGTCTTTTTTTTTTCTTTTTTTTCCCTCCCAG
Seq C2 exon
GACAGCCTATGAAGTCTTAGGACAGTACTAATGGAAGGCCCTTTGCAAACCTCCATTCACGTGTGCCATGAAAATGCTCAGTGGATGTCAAAATTACCAGAAAAGCTCTGGGATACTCCCCTCTTTAACTTATCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721:ENSGALT00000026984:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]