HsaINT1027306 @ hg38
Intron Retention
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:281482-284314:+
Coord C1 exon
chrX:281482-281684
Coord A exon
chrX:281685-284166
Coord C2 exon
chrX:284167-284314
Length
2482 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTCCTCTTCTCCTTCCTCAGGTT
3' ss Score
11.55
Exon sequences
Seq C1 exon
CCACCTGGGAAGCCTGGCCTCAGTGTGGAAGAGAAGGCAGCAGGATTATTACAGAACCTTGTGAAGCCAACGCGGGCAGCCGCCAGGAGCTGCAGACCGAGAGGATCTCGTCCTTTCTTGCGGCCCAGGGAGACCAGGCCTTTCATTCTGGGCTCGAGACCAACAATTCGAATTCCGAACTCCCCCTGCGTGTGGGACTCAAG
Seq A exon
GTGGGTTTGCAGTTTGCAGGCAGCTGAAGTTTGTCTCTTCTCCAGGAGGCCGGGGCTTCTTCCCTTCCTCTCTGTCCCATTTCTTTTTTCTTGAGACAGAGTCTCACTTTGTCACCCAGGCTGGAGTGCAATGGTGTGATTGTGGCTCACTACAGCCCCCGCCTCCCGGGTTCAAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGCGCCACCACGGCCGGCTACTTTTTGTACTTTTAGTAGAAATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACCCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGATGGGATGACAGGCGTGAGCCACCGTGCCCGGCCCCTCCAGGTCTCATTTCTAAGAGGAGGCCTCAGGTCCACCAGGAAACATTCCTCAGATGTGAAACTGTCAACAGGCTGATTTCTGGGCTCAAGATCAACAATTCTAATTGATTTGATTAAATCAATTAGATCTAATGATTTTAATCTAATCAGTTTTAATCTAAATGATTAAAAATCTTACATACATTGCCGGGCGTGGTGGCGGACGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCATCATTGCACTCCAGCCTGGGTAACAAGAGTGAAACCCTGTCTTTAAAAAAAACAAAACAAAACAAAAAAAAAACCGTACATACAGCTGGGCACCGTGGCTCACGCCAGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGACTAGCCTGACCAAGATAGTGAAACCCCGTCTCTACCAAAAATACAAAAATTAAGCAGGTGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGCGATCGCGCCATTGCAGTCCAGCCTGGGCAACGAGAGGGAAACTGTGTCAAAAAAAAAAAAAAAAGACCAACCAAAAAAGTTATATACACTTCAGAGGCAGAGAAAGAATTTACAAGTTGTCTAAAATGTCCTTATGGAAAGGGTCACTTCCCTTATTTTCAACAGTATATTATATATATATACTTATATATGTATATATAGTGATGTATATATGTATATATGTTATGTATGTGTTATATATGTCTATATTATATATGTATATATGTTATACATGTATGTTATATATATATTATATATATATTATATATGTATATATTATATGTATAATATATATTATATGTATATATTATATATGTTATATATATGTTATGTATATAATATGTATATATGTATATATTCTGTTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTAGGCGACACGGACACACGTGGAGTGGTTTTAAGGAGCGGAGAGTTTAATAGGAAAGAAGGGAGGTCCGGGCAGTGGCTCACGCCTGTAATCCCAGCACCGCGGAGGTTGCGGTGAGCCGAGATCGCGCCATTTCACTGCAGCCTGGGCAACAAGAGCGAAACTGCGTCTCAAAAAAAAAAAAACCAAGGCGAGAAGGCAGAAAGAAGTGGCTCCCCTGGACTGAGACAGAGGGACGGGGGCTCCAAACCCCAGGCAGGAGACCAGCCCGTGTTATACGGTGCCTGGAGGAGGCGTGACTCATTTGCATAGCGCTGAGGGGATTGGTCTGACCAGGCCTGTCATTCACGTAGCCCGCGAAAAACCTGGCCCGCCCACCCCAGTTCCGTAATATGCAAATGTAGGGCGCCATGATGTTCCACACGCCTGAGGGTAGTGGGGGCGGCCGTGGTGTCAGGCCCGGGTGGGGGCGGCCTTGGTGTCAGGCCCGGGTGGGGGCGGCCGTGGTGCCAGGCCCGGGTGGGGGCGGCCGTGTTGCCAGGCCCGGGTGGGGGCGGCCTTGGTGTCAGGCCCGGGTGGGGGCGGCCTTGGTGTCAGGCACGGGTGGGGGCGAGGGCAAGAGGGCAACGGTGGGAATCGCCATGTGGGCTGGACCAGCTAAAGGCTCGCATTTGCATATTAAAGGTTGCCAAGCCGGGTCTAAGAGCCAGGGCTTTCACGCTAGACAAGAAACATTTTTTGGAGCTGCAAAAAATGCTTCCAAGGACCCCTTTTCCTCTCTCTCTCTCTCTTTTTTTTTTTTCTTTTTTGGATATGGAGTTTCACTCTTGTTGCCCAGCCTGGAGTGCAGTGGCGGGATCTCCGCTCACTGTAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATGACAGGTGCCACAGGTGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGTCAAGTTGGCCAGGCTGGTCTCGAACTCCTGACCTGAAGTCACCGTAAAAAACCTCTTTTCCTCTTCTCCTTCCTCAG
Seq C2 exon
GTTGCCCAGGGCTCACCTCTGATGGGTGGGCAGGTGAGCGCTTCCAACAGCTTCTCGAGGCTGCACTGCAGAAATGCCAACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGATGTGCCCCTCCACCACCTCTCCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378:ENST00000399012:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0038814=PI-PLC-X=PU(6.5=25.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains