GgaINT1021880 @ galGal4
Intron Retention
Gene
ENSGALG00000016721 | PLCXD1
Description
PI-PLC X domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001122109]
Coordinates
chr1:129423877-129426468:-
Coord C1 exon
chr1:129426285-129426468
Coord A exon
chr1:129425672-129426284
Coord C2 exon
chr1:129423877-129425671
Length
613 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTTTCAATATTTTGTTTCAGAAA
3' ss Score
9.62
Exon sequences
Seq C1 exon
GTGGTTCCAACTCTGCGGACCATGTGGCAGCGTGGCTATCAGGTTATAGTCTCATATGAAGAAGATCTGGAAGTGCTGAAGCACTGCGAGCTGTGGCCTGCAATCCCATACTGGTGGGGAAACAAAACTACCACTCATGCTCTCATCCAGTTTCTAGAACTCATGAAGCAGATGGGCCGTCCAG
Seq A exon
GTACCCACGTGGGGCCACTTGAGGGAAACAAGGGGCACATACAGCAATGCAAACCAAATAGAAATAGTCAACTGGGAGTTCATAGCATTGAGGGATAGAACACCGTTGTGCATGCTGCATGCTCTAGACACTTACATGTTGCTGAGTGCTCTTGCCCACCCATGGGTGAGTGCAACATGCATGTCATATTACCTGGTTGTGTAGATGTGTGCACAAGTGTATGTACATACGCAAGCTATACCATTGCAGCAGCTCCTTCATCTATGGGATCCTGTGGGAAAGAACCCAAGCCTTTCCCCTCATTGCAGAGCAGCCATCTGGCTGTCAGTGCCCTTGTCACGCATAAGAGACTGCTGTCTAAGCCCAGTGCTTGCTGGCTTTTACTGCTTTAGACAGCTCTGAGGATGAGGAAAAAGCGGTATGGCACACAATAGTAACAAAGGAAGACAGCCCCCTGAAACAGTTCTACGTCTATGAAACAATACGGAAAGATTCTTAAGTTAGCGTGTTAATGATTCCCAGTGAACCAGACCTTGAGTTAATGCAACGCTGAGCAGTCTCTGCTCTCCTCAGAGGAGTATTTAATGTGTCACCTTTCAATATTTTGTTTCAG
Seq C2 exon
AAACATTCTTCGTTGCGGGGATTAACCTTACTGAAAATCTAAGATATATTCTTGTACACCCGTTTGGATCACTGAAGACAATGACACTCCGGAGTCTTCCATGCTTGAAAATCTGGGTGAGGAAGCAGTATCCAGGACCACAAAAAGAATGCATTAACATCATTGCTGGAGACTTCATAGGAAATGACGATTTTGTCAGAGATGTGATAGAACTTAACACAAAAATTAATCCTCAGTTAGACTGTCCCAGCAAAGGGTCTGGACCAAAGAGCATTTCATTCTCAGCTTTTTAAAAAATCTTTGAAAAGCTGAAAAGACTTTGTGTGCATTTAATATTTCCTGGTTTAAACACCCTGGACTACATAAAGATCCAGTGAAGTTAAACCAGGGATCATTAAGCTCATTAAGAAGCACGCTCTCAACATCATCAGGCTTTCAAAGTCTTTTCTTAAAAAAAGAGCAGGAAGATCTTGCTGAAGTCTTTAGAGAACTGTGAGATAGGCACAATTTACTTGAGAGGTGCTTAGCTCATGCAGCAGCTGGCAGTATTGAAAGTTTCAAGATCTGTTTAACATATGAGCGAGAAGTAGAAATATGTCACTAGCTGCACAAATTATTCTGTGATTTTATTTTCTTTCTGCACATACTTGCAACCCCAAATCTCAGTATTTTATCAGTGTGAAACTAACTTGCCTGTTTTCACAGTTTGTATTGAATACATACAATGTGGGCAATTGAAAAATGTTTTTGATCTATCAAAGATACTGTACTGACACTCTCACTTGCCACAACATTTACATGTACACTGATCTGGAGATCTAGTATCAGCTGTATTGTTGTGTGCTGAATATCAGTTGTGAACCATGTCACTACCAGGGTAGTCATAACATTCTTACTATTTTTAAGAGATGTGTAACAGAACACTTTGTTCTTGTTATCGTTGATGGCAGTTCTGCCACAGCCAGCTCCCTGGGCAGTTTTGTCTGCTGCAGTAAAATGTTTTTATATTAGGAGCTGTAAAAATACCCCTTACATTAGAAAGTAGTTTTGTATGTATCTGCTTTCCGTTTGAACTGTCTGCTCTAAAAATACAGATCATTGGCTTGTCATTCTTATTTGAGGTTTCACAACTGATTTTCCTTTATTTACATATTTTTGTAGCGCTGTAGTTATCTTCCTCTCGAGAAGTATTCTTTGCTTGCTTAAACACTGTTTTATGTAAGTTAATTCTATTTTTCTAATTTTTAAATGAACTGTGCAATAACAGATGATCATGACGGTAAGAGAAAGGGCAACTATCAGGGCTAAAACAAAACAGGCATTGTATAGAGTTACTATGCAGCTTCATGAATATACCTCACTTTTTATATGCACTTTACATGTAGCAACTGAGTTCAACTGTCCGGCAAGATGTTGTGTTTGCAGTAGGTAGCTGCCTAACTTCAAAATGGATAGCTACTTGATACCAGATCAAAGTTACCTTTGACTGCTAGGGATGAAAGGCTCAGATGCTACCTCCTCATGCAATCTCCTACAATTGCAGACTATGTAGGAGTGAAAACCTAACATTCCACTTAGTTAGAAGACTTTCTAAATGCTTTTTTACAGTGCTTTTTTTATCCTTGATCTCACTCGTGTTTACTTCATATAGAGCAGTCATTCAGTTTGGTTTTTTAGAGTTGCCACCTGCGCAAAGTGCTGTTCTAACTCAGAATGTTTTTCTGCATATCTTTTGTACCCTTCATGTGTCTTGTCACTTTACCTAATAAATCTTGACCTGTTTGTGCACTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721:ENSGALT00000026984:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PD(18.5=38.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAATCCCATACTGGTGG
R:
GGTCCAGACCCTTTGCTGG
Band lengths:
353-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]