GgaINT1022406 @ galGal4
Intron Retention
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13267269-13267552:-
Coord C1 exon
chr14:13267511-13267552
Coord A exon
chr14:13267431-13267510
Coord C2 exon
chr14:13267269-13267430
Length
80 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
3' ss Seq
TCTGCCTGTCTCCCTGCCAGGCC
3' ss Score
10.18
Exon sequences
Seq C1 exon
GAATACACGAGTGACCTCCAAGCCAAGTACCAGAAGCTGCTG
Seq A exon
GTAGGAGACCCGTGGGGTGCAGGGCTGGGCTGGGGCAGGGAGAGGGGCGCGGGGCTGAGCTCTGCCTGTCTCCCTGCCAG
Seq C2 exon
GCCAGCTCTCAGCAGCGGCAGCAGGACCTGAACTCGCTGCAGGACTACATGCAGCGCTGCACCAACAAGCTCTACTGGCTGGATCAGCAGGCAAAGGACCGCACGCACTACGACTGGAGCGACCACAACCTGGACTACCCCAGCCGGCGCCGCCAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACACGAGTGACCTCCAAGC
R:
TGGTCGCTCCAGTCGTAGTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]