RnoINT0116067 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10671342-10672457:+
Coord C1 exon
chr10:10671342-10671383
Coord A exon
chr10:10671384-10672295
Coord C2 exon
chr10:10672296-10672457
Length
912 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
GCCTCGTTCTCACCCCTCAGGCA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GAGCAGAACAGCGAACTCCAAGCCAAGTATCAGAAGTTGCTG
Seq A exon
GTGAGAAGCCCTGGGAGGCGGGATAGGGCGGGAGGCTTATGGGCTGAGGCCACACCGCTCTAACAGTGACAGCTCTAGTGTCACCACAGTGGTTTGTGAGGTGCCAGGGATGGAACAAGGGCTTTGTGCATCCTATTAGGTCAGCGTTCTGCCATCTGAGTTACGCTAAGCCCTGCTCAGTTCTTCACGTAGCATCGCCACATGCCAAGCTGATGCCATGCAATTTGAGTATGGTCCAGGCAGTGTGTGCACAAGTACCTGCATGTATGACGTGCGTGCTTGTCATTCTTTTTCTACCAAACAAAGTGCAAGCCTCCTACTCCTCCCTAACCCTTCCTAGCTCTGAGTGCCTCCAGATGCTTCTATGGGCACGCATAAGCGGCTGAGACATAGCTTGGTTTGGAGAGTGCTTGCCCTAGAAAGCATGAAGCCCTGGGTTCCACCCCTATTTCCAAATAAAGCCCAGGCATGGGGATGCACACAGGTCATCCTAGCACCTGAGAAAAGAGGCAAGAGGGTCAGGAGTTTAGGGGCATAACAAGTTTGAGGCCATCCTGGGCTACATGAGACCCTGCCTCAAGTGAGTAAATAAATTACTAATGATAAAAAAGCAAATGTGGAAGGCATGGCTGGTGTTTATCGAGTGCTAGCTATGTGCCAGATGGCAAACCGAAGCCTCAAGGAGACATCAGTACCACTGGGATCTTTGTTCTTTGTTACTGGTGTGTCCTCAGTGCCTAAAACCGTGCTACACACCTACTTGGTGCTCAATAAACACCTGCAAGTGAATGTTTCGGAGGATCAGGTGACTTAGCAGGGGTTGGGGGACTGGCTGGGAAGTAGCAGGTTGGCAGTAGTAGGAGGCAGGCAAGGAAGCCCAGCCCGCGTCTTCGCCTCGTTCTCACCCCTCAG
Seq C2 exon
GCAGCATCACAGGCTCGGCAGCAGCACCTGAGCTCGCTGCAGGATTACATGCAGCGCTGCACCAATGAGCTGTACTGGCTGGACCAGCAAGCCAAGGGCCGCATACAGTATGACTGGAGTGACCGCAACCTCGACTACCCCAGCCGCCGGCGCCAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(41.3=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAACAGCGAACTCCAAG
R:
GGCTGGGGTAGTCGAGGTT
Band lengths:
186-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]