GgaINT1022457 @ galGal4
Intron Retention
Gene
ENSGALG00000009686 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23964925-23968091:+
Coord C1 exon
chr2:23964925-23965002
Coord A exon
chr2:23965003-23967892
Coord C2 exon
chr2:23967893-23968091
Length
2890 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TGCTCCTTTCTCTTCTGCAGGAC
3' ss Score
12.24
Exon sequences
Seq C1 exon
GGCTCCCTTGCGAAGGAGTTCAAACAAGGGCAAGAAGCGGAAAGAGAAAGAAGCTATTAGGGTGACCTGTGGCATTAG
Seq A exon
GTATGGGTAAAAGAGTGGGGATGCAAGAAATGGCATGCCAGAAACGTTGAGAAAATGTAATTTCCCTAAAACTTGAAGGCTGACAGTCCCACTGCCTTCATAGAAATTAATTCTAAGCCTTGAGGCGACCTGCTGAGCTTACAAACCTAGATTTCTTAACTAAGGGATGGCTAACCAATAATCTAAAAATGCTTGGAGATTTCTGTCACTACTGCAATTGCATCGACTGCTTAGATTTGCAGAAATAGGTAATTAGAGCTGGCCTACAAGATGCATACACACAGACAAACACTAAGTTATTAATAGCCTAGATTCAGAAACCTTGACGCAATTCCACATAGTTTGGAGGAAAAGCCCCAAGAGCAGGGTTGGGCAACAGATATTCCCTGCAGCTTCACTGTGCCCACTTCAGGAATGCTTTCAGAAGGTTTTGTTTCTGAAGATGAACGTCATAAGTTGAAAGCAGAAAGAAGAAATGCAGACTGCATTGGTCATGTCACCAACTCTCAGGCAAGGAATTTTGGATTATCTGTGAGATTTGATGAGACCACACCATCAGCATCTGGCCTCTGAATAAATAAATGAGCATTCAAAATGACAGGAAGCAATCTTTTCTACAAAGGATGGTGTAGATTTTTAATGAAGGTCTCCTTGTATAGTGATGAGTCTGACACAGTCCCATCCAGAGGGGCCATACCTGGCTCCAGGTATGAGAGGCAAGCATTCAGGTAAACATCAGGAGTGCTAAGCAAACATAATATATTCTGAAAGTCCTAGGGTTCTAGCAACTCTAAATTTTTCTAAACATAAAGTAATGCAAAAGAAGGTATACGCGATAGAAGAGCTTGCTAAAGAAAGCAAAGTTCACATGCTGTTCCAAAAATGTATGCATTTGAGAAACTGTAGCAGCTTGGAGAGTTTTGCTGACAGTCTGACACGTAGAGTCCTGGGGACAAGTCTCCTTAAAATCACAGAAGCAGAAGAAATGTTAGACTTCTGACATACCCCTTCAGGCATACTGTACTGAATTGCAAGTTTCCTGTTCTAACACAGCATACACTCACATTCTGCACATATCTGGCAGGATCTTCGGTGATCTTATAGCAGTCAGCATCTCTGTGCTGGTGTCAGAACAAACTGTAGCAGTCATTCTACTGCTTGCAGTGTGCCTTACAGTTAAGGTTCATTGCTGTACTTCCGTACTGGAAGAGGGATTTGTTAAACCAAACACACTGTGCCTGTGCTTACCTGTAAGGCAGCTCATGCCCTTAGCAGAGCATTGACACCGGGTGGCATTTAAGTACCAAACAGACTGGGGAGAAGGAAGGTACGCTTCCTTATAAACAGGCTCTACAGAACTTATGTTCCTGATAGCAACATAACACATTAGAGGTGTTAATGAAATGCAGCAGATATCTTCCTTAGAGGAAGCAGATATCATCGTAGGACGATCAGTTGCTGATGAGACCCTCTGATAAATCAGCTATTTGCACTGTTTGTCACTGAATATTTCTGAGTTTGGATACGTTTGCTAAAAACAAAGTTCAGTACTACTTTGAAACTCTAAATTCATGAGCATTTATAATCCTTGCTGCGCTTCTGTAAACTGAAATGTTGTCGTTTCAGTGTAACTTTTTAAACACCAGTTGTCATTTCCTTTGTTAGTAACTACGAAGGATTTGCCTGAGAAAAATCTGAGGATGTTTTCTTTACAGTCCAAAGCTGTATGAGCTCTTTGAAAGAAGGAAGATGATGATCGAAAGACAGCATCCTGTTATAATTATTTTTGTCTATTAGAGCATTAGAGATTGATGTAGAATTAATCACGCTGTCAGATATATGTTGCAAGCATTATTTTGCCATTCAAGAAAAAAAAAAAACCCTAAAAAAAATACCAAAAAACAACTGAAGATGTGTAGAAGAAAATCCTGAATTATTTCTGAAGGCTACCACTGATGTTAAATATATAGACAGATTCCCTCCATTTAAGTAGAAGGCACATACGCTTATATTCCCTAGCCTGGAGCAGTAGGTGATTTGGACAACGTCATTCCTTCTGTCTTCTTTCAAGCAGTATTGGAGCACGAGGAGGGAGCACAGGACTGTATCAGACACATCTACATTTAAGTAGCCAAAGGGAGAGAGGATTCTGGTTCTGCCTTGCTGTCTGGGGGCTCTCTGGCAGCCTCCATTTCATCCATACAGAAAAGAAGCTTCCCAATACACAGAGCTAGTGATTATGTTCATAATGATTTAGAAGCTGAGGGAAGATTTATATACTGCTACTATGAAAAGGCTAGCTGATAACGTCAAATGTTTATTTCATTTTTTTTTCTATAGTTGTATTTTCAATATTTAATTCAAAACAAACAAACAAACAAACAGAAAAGAACACCAAGATGTCTCTCAGTATTTAGCTGTTGTAACAAAGGCACATCTATGTAGGTGTGTGCATACGCACCCAGTTCCTTCTGCCTGCGCTCGAAATCCAAGCCAGACCTGTCAGGGAAGCAGAGCCTGCCTGGGTCAGTGCTGAGTCTGATCACGCTGAGATAGCAAGGCCCAGTGGTACCAGCACCGCGTGTGGCTTCTTGACTGGAGCTGGTTCACACCAAAACACAGGGACACAGGCACTTTGTGCAGGCATCTGTCTCCATTTGCTGCATGCGTGTTATCTCAGAGAGCTAGAGTTAGAAAAGAAATCAAAAGAACACGCTTTTTCCTTCTTTTGTTAGAAGAGAGATTTCAAGAATGCTGTCACCAGCTGCATGCCACTGTGCTGATTAGTCACAGTTACACGGAATGTCATTTTTTTACAATTAGCTACCTCTGTAGCATTTTTTCATATTTTATTCTCTAACACAAATCCCTGCTCCTTTCTCTTCTGCAG
Seq C2 exon
GACCACCAGAGAGATGCTGCAGAAATCAGCCAACAGTAAATCTTTAACAGAACGGTCCTCCTCTCTCCCACACTGTGTACCACTCACATGGTATGGAGAGGGTGGCAAGGGATCCAATTCTTCTAGCAACCTGCCGTCACCTACCAGCTCAACAGAACCTTCCTCTGAAAACATAAGCCCAGCTAAAAAAGGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686:ENSGALT00000015764:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]