GgaEX1045620 @ galGal4
Exon Skipping
Gene
ENSGALG00000009686 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23959044-23970585:+
Coord C1 exon
chr2:23959044-23959201
Coord A exon
chr2:23964750-23964837
Coord C2 exon
chr2:23970466-23970585
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATGTACAAATGTATCCTAGATG
3' ss Score
5.94
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATTTCAACGAGGCAGTGCCAGAAACAGAGAGACTGGACTCAAAGGCTCTGAAAACCCGAGCTCAGCTTTCAGTGAAGAACAAGCGGCAGAGGCCAACTAGGACAAGGCTCTATGACAGCATCAGTTCAACTGATGGAGAGGACAGCCTTGAACGAAAG
Seq A exon
ATGGTGCCACATGTACCCAGGCAGCAAGAACTACTCTCCCTACTATAGGGCATGCAGAAAAACTAAAGCGAAAACTTGCAGATCTCGG
Seq C2 exon
AATTTCACGTTCAACGATGACTTCAGTCCCAGCAGCACAAGTTCAGCTGATCTGAGTGGTTTAGGAGCAGAACCCAAAACCCCAGGTTTCTCACACTCCTTAGCACTATCGTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686_MULTIEX1-2/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGAACAAGCGGCAGAG
R:
AACCTGGGGTTTTGGGTTCTG
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]