GgaINT1022456 @ galGal4
Intron Retention
Gene
ENSGALG00000009686 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23964750-23965002:+
Coord C1 exon
chr2:23964750-23964837
Coord A exon
chr2:23964838-23964924
Coord C2 exon
chr2:23964925-23965002
Length
87 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
GTTTTCCAATATTGTTGTAGGGC
3' ss Score
7.48
Exon sequences
Seq C1 exon
ATGGTGCCACATGTACCCAGGCAGCAAGAACTACTCTCCCTACTATAGGGCATGCAGAAAAACTAAAGCGAAAACTTGCAGATCTCGG
Seq A exon
GTAAGCATTTGTTACTTAAAATATCATTTTTATTTAAAGAATTAAAATTTCAAGGACATTTTCTAATGTTTTCCAATATTGTTGTAG
Seq C2 exon
GGCTCCCTTGCGAAGGAGTTCAAACAAGGGCAAGAAGCGGAAAGAGAAAGAAGCTATTAGGGTGACCTGTGGCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686:ENSGALT00000015764:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGTACCCAGGCAGCAAG
R:
CTAATGCCACAGGTCACCCTA
Band lengths:
159-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]