BtaINT0116704 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12362039-12362308:+
Coord C1 exon
chr4:12362039-12362126
Coord A exon
chr4:12362127-12362224
Coord C2 exon
chr4:12362225-12362308
Length
98 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
ACTGTGTGCTATCATTACAGGGC
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATGGTGCCAAAGGTCCCAAGTCACTAAGGGCATCCAGTTCATTGGTGGTGCGAGGAGGAAAAATCAAGCGGAAGTTCGTGAATCTGGG
Seq A exon
GTAAGCGCTTCACGAGGTGAAAAGCAAACCCTCTTTAAGAGAAGGGTTAAAGGAGAAAATGTTCCATTCCCCTTTCTGACTGTGTGCTATCATTACAG
Seq C2 exon
GGCACCTTTGCGGAAGAATTCCAACAAAGGAAAGAAATGGAAAGAGAAAGAGAAAGAAGCCAATAGGCTTTCTCCAGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426:ENSBTAT00000020761:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.862
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAAAGGTCCCAAGTCAC
R:
CTGCTACCTGGAGAAAGCCTA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]