HsaINT0130730 @ hg19
Intron Retention
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94903211-94903480:+
Coord C1 exon
chr7:94903211-94903298
Coord A exon
chr7:94903299-94903396
Coord C2 exon
chr7:94903397-94903480
Length
98 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
ACTGCTTACTATCATTACAGGGC
3' ss Score
8.28
Exon sequences
Seq C1 exon
ATGATGCCAAAGATCCCAAATCACTAAGGGCATCCAGTTCATTGGCGGTGCAAGGAGGAAAAATTAAGCGGAAGTTTGTGGATCTGGG
Seq A exon
GTAAGCACTTCACGATGTAAAAAGAAAGCCCTCTGTAAAAGGAGGATTGAAAGAGAAAATTTCAGCTTCCCCTTTCTGACTGCTTACTATCATTACAG
Seq C2 exon
GGCGCCTTTGCGAAGGAATTCCAGCAAGGGAAAGAAGTGGAAAGAAAAAGAAAAAGAAGCCAGTAGGTTTTCTGCAGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-PPP1R9A:NM_001166160:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCCAAAGATCCCAAATCAC
R:
ACCTGCAGAAAACCTACTGGC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)