MmuEX0036732 @ mm9
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5084017-5106240:+
Coord C1 exon
chr6:5084017-5084174
Coord A exon
chr6:5093228-5093315
Coord C2 exon
chr6:5106121-5106240
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTATGTGTCTATGTCCTAGATG
3' ss Score
7.49
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACCTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCATTGAAAACCCGGGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACACGGCTCTATGACAGCGTCAGCTCAACTGATGGGGAGGACAGCCTGGAGAGGAAG
Seq A exon
ATGATGACAAATATCCTAAATCACTAAGAACATCCAGTTCATTTGTGGTACAAAGAGGAAAAATTAAGCAGAAGTTTGCGGATCTGGG
Seq C2 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGCTCAGCAGACCTGAGTGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827_MULTIEX2-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.923 A=1.000 C2=0.953
Domain overlap (PFAM):
C1:
PF086345=Pet127=FE(65.0=100)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCTCTCTGTGAAGAAC
R:
GCGTTTTGGGTTCTGCTCCTA
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types