HsaEX6009062 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95269207-95274168:+
Coord C1 exon
chr7:95269207-95269507
Coord A exon
chr7:95273899-95273986
Coord C2 exon
chr7:95274085-95274168
Length
88 bp
Sequences
Splice sites
3' ss Seq
CACAAATGTGTATATCCTAGATG
3' ss Score
6.04
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
CCATCAAACAGTTTCTATAACCACATGCATATTACCAAATTACTTCCACCTAAGGGTTTGAGAACGTCTTCTCCAGAATCAGATTCTGGTGTTCCACCCCTCACCCCGGTGGATAGCAATGTGCCCTTCTCGTCTGACCACATAGCTGAATTTCAAGAAGAACCACTGGACCCAGAAATGGGGCCTCTCTCCTCTATGTGGGGAGACACTTCACTGTTTTCTACTTCAAAGTCTGATCATGATGTGGAAGAATCTCCTTGCCATCACCAAACCACCAACAAGAAAATATTACGAGAAAAAG
Seq A exon
ATGATGCCAAAGATCCCAAATCACTAAGGGCATCCAGTTCATTGGCGGTGCAAGGAGGAAAAATTAAGCGGAAGTTTGTGGATCTGGG
Seq C2 exon
GGCGCCTTTGCGAAGGAATTCCAGCAAGGGAAAGAAGTGGAAAGAAAAAGAAAAAGAAGCCAGTAGGTTTTCTGCAGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'40-55,'40-54,44-55=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=0.710 C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGAGACACTTCACTGT
R:
CCTGCAGAAAACCTACTGGCT
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains