HsaEX6009062 @ hg19
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94898519-94903480:+
Coord C1 exon
chr7:94898519-94898819
Coord A exon
chr7:94903211-94903298
Coord C2 exon
chr7:94903397-94903480
Length
88 bp
Sequences
Splice sites
3' ss Seq
CACAAATGTGTATATCCTAGATG
3' ss Score
6.04
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
CCATCAAACAGTTTCTATAACCACATGCATATTACCAAATTACTTCCACCTAAGGGTTTGAGAACGTCTTCTCCAGAATCAGATTCTGGTGTTCCACCCCTCACCCCGGTGGATAGCAATGTGCCCTTCTCGTCTGACCACATAGCTGAATTTCAAGAAGAACCACTGGACCCAGAAATGGGGCCTCTCTCCTCTATGTGGGGAGACACTTCACTGTTTTCTACTTCAAAGTCTGATCATGATGTGGAAGAATCTCCTTGCCATCACCAAACCACCAACAAGAAAATATTACGAGAAAAAG
Seq A exon
ATGATGCCAAAGATCCCAAATCACTAAGGGCATCCAGTTCATTGGCGGTGCAAGGAGGAAAAATTAAGCGGAAGTTTGTGGATCTGGG
Seq C2 exon
GGCGCCTTTGCGAAGGAATTCCAGCAAGGGAAAGAAGTGGAAAGAAAAAGAAAAAGAAGCCAGTAGGTTTTCTGCAGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.700 C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGAGACACTTCACTGT
R:
CCTGCAGAAAACCTACTGGCT
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)